Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23840 and AMB_RS02040 are separated by 441 nucleotides AMB_RS02040 and AMB_RS02045 are separated by 253 nucleotides
AMB_RS23840: AMB_RS23840 - IS5/IS1182 family transposase, at 429,860 to 430,701
_RS23840
AMB_RS02040: AMB_RS02040 - hypothetical protein, at 431,143 to 431,541
_RS02040
AMB_RS02045: AMB_RS02045 - hypothetical protein, at 431,795 to 432,820
_RS02045
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.722 kb on + strand at 430.722 kb on + strand at 430.764 kb on + strand at 430.764 kb on + strand at 430.764 kb on + strand at 430.764 kb on + strand at 430.778 kb on + strand at 430.778 kb on + strand at 430.779 kb on - strand at 430.779 kb on - strand at 430.833 kb on + strand at 430.833 kb on + strand at 430.834 kb on - strand at 430.834 kb on - strand at 430.834 kb on - strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.840 kb on + strand at 430.841 kb on - strand at 430.841 kb on - strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.842 kb on + strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.843 kb on - strand at 430.909 kb on - strand at 430.922 kb on + strand at 430.923 kb on - strand at 430.923 kb on - strand at 430.989 kb on - strand at 431.017 kb on + strand at 431.017 kb on + strand at 431.017 kb on + strand at 431.318 kb on + strand, within AMB_RS02040 at 431.319 kb on - strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.420 kb on + strand, within AMB_RS02040 at 431.421 kb on - strand, within AMB_RS02040 at 431.421 kb on - strand, within AMB_RS02040 at 431.462 kb on + strand, within AMB_RS02040 at 431.462 kb on + strand, within AMB_RS02040 at 431.463 kb on - strand, within AMB_RS02040 at 431.463 kb on - strand, within AMB_RS02040 at 431.560 kb on + strand at 431.670 kb on - strand at 431.723 kb on - strand at 431.780 kb on + strand at 431.873 kb on + strand at 431.923 kb on - strand, within AMB_RS02045 at 432.018 kb on + strand, within AMB_RS02045 at 432.018 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.070 kb on + strand, within AMB_RS02045 at 432.071 kb on - strand, within AMB_RS02045 at 432.185 kb on - strand, within AMB_RS02045 at 432.254 kb on - strand, within AMB_RS02045 at 432.331 kb on + strand, within AMB_RS02045 at 432.332 kb on - strand, within AMB_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 430,722 + -1.4 430,722 + +0.2 430,764 + -0.3 430,764 + +0.2 430,764 + -0.7 430,764 + +0.2 430,778 + -2.5 430,778 + -0.2 430,779 - -0.6 430,779 - -0.3 430,833 + +0.6 430,833 + -0.1 430,834 - +0.6 430,834 - -1.0 430,834 - -0.4 430,840 + -1.4 430,840 + -0.2 430,840 + -2.1 430,840 + +1.6 430,840 + +0.4 430,841 - -0.4 430,841 - +0.1 430,842 + +0.0 430,842 + -0.1 430,842 + -0.4 430,842 + +0.3 430,842 + -1.4 430,842 + +0.6 430,843 - +0.6 430,843 - -2.2 430,843 - +0.6 430,843 - -2.3 430,909 - -1.4 430,922 + -1.4 430,923 - +0.1 430,923 - -0.4 430,989 - -0.7 431,017 + -0.5 431,017 + +0.5 431,017 + -3.1 431,318 + AMB_RS02040 0.44 -1.7 431,319 - AMB_RS02040 0.44 -1.5 431,420 + AMB_RS02040 0.69 +0.0 431,420 + AMB_RS02040 0.69 -0.0 431,420 + AMB_RS02040 0.69 -1.7 431,420 + AMB_RS02040 0.69 +0.0 431,420 + AMB_RS02040 0.69 +0.6 431,420 + AMB_RS02040 0.69 +0.9 431,421 - AMB_RS02040 0.70 -2.7 431,421 - AMB_RS02040 0.70 +0.7 431,462 + AMB_RS02040 0.80 +0.6 431,462 + AMB_RS02040 0.80 -1.9 431,463 - AMB_RS02040 0.80 -0.5 431,463 - AMB_RS02040 0.80 -1.0 431,560 + -1.4 431,670 - +0.1 431,723 - -1.5 431,780 + -0.7 431,873 + -0.5 431,923 - AMB_RS02045 0.12 -0.3 432,018 + AMB_RS02045 0.22 +0.5 432,018 + AMB_RS02045 0.22 +0.0 432,070 + AMB_RS02045 0.27 +0.6 432,070 + AMB_RS02045 0.27 +0.0 432,070 + AMB_RS02045 0.27 -0.4 432,071 - AMB_RS02045 0.27 +0.6 432,185 - AMB_RS02045 0.38 -0.4 432,254 - AMB_RS02045 0.45 -0.4 432,331 + AMB_RS02045 0.52 +0.6 432,332 - AMB_RS02045 0.52 +0.0
Or see this region's nucleotide sequence