Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01890 and AMB_RS01895 are separated by 2 nucleotides AMB_RS01895 and AMB_RS01900 are separated by 2 nucleotides AMB_RS01900 and AMB_RS01905 are separated by 8 nucleotides
AMB_RS01890: AMB_RS01890 - phage terminase large subunit family protein, at 402,077 to 404,062
_RS01890
AMB_RS01895: AMB_RS01895 - hypothetical protein, at 404,065 to 404,274
_RS01895
AMB_RS01900: AMB_RS01900 - phage portal protein, at 404,277 to 405,707
_RS01900
AMB_RS01905: AMB_RS01905 - S49 family peptidase, at 405,716 to 406,948
_RS01905
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 403.469 kb on + strand, within AMB_RS01890 at 403.487 kb on + strand, within AMB_RS01890 at 403.512 kb on + strand, within AMB_RS01890 at 403.512 kb on + strand, within AMB_RS01890 at 403.513 kb on - strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.580 kb on + strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.581 kb on - strand, within AMB_RS01890 at 403.667 kb on + strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.668 kb on - strand, within AMB_RS01890 at 403.673 kb on + strand, within AMB_RS01890 at 403.673 kb on + strand, within AMB_RS01890 at 403.674 kb on - strand, within AMB_RS01890 at 403.883 kb on + strand at 403.884 kb on - strand at 404.161 kb on + strand, within AMB_RS01895 at 404.161 kb on + strand, within AMB_RS01895 at 404.208 kb on + strand, within AMB_RS01895 at 404.430 kb on + strand, within AMB_RS01900 at 404.451 kb on + strand, within AMB_RS01900 at 404.451 kb on + strand, within AMB_RS01900 at 404.823 kb on + strand, within AMB_RS01900 at 404.824 kb on - strand, within AMB_RS01900 at 404.997 kb on + strand, within AMB_RS01900 at 404.998 kb on - strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.205 kb on - strand, within AMB_RS01900 at 405.205 kb on - strand, within AMB_RS01900 at 405.262 kb on - strand, within AMB_RS01900 at 405.262 kb on - strand, within AMB_RS01900 at 405.297 kb on + strand, within AMB_RS01900 at 405.297 kb on + strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.403 kb on + strand, within AMB_RS01900 at 405.403 kb on + strand, within AMB_RS01900 at 405.404 kb on - strand, within AMB_RS01900 at 405.404 kb on - strand, within AMB_RS01900 at 405.444 kb on + strand, within AMB_RS01900 at 405.591 kb on + strand at 405.591 kb on + strand at 405.592 kb on - strand at 405.705 kb on + strand at 405.706 kb on - strand at 405.706 kb on - strand at 405.706 kb on - strand at 405.750 kb on - strand at 405.750 kb on - strand at 405.962 kb on + strand, within AMB_RS01905 at 405.963 kb on - strand, within AMB_RS01905 at 405.963 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.185 kb on - strand, within AMB_RS01905 at 406.185 kb on - strand, within AMB_RS01905 at 406.376 kb on + strand, within AMB_RS01905 at 406.376 kb on + strand, within AMB_RS01905 at 406.377 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.686 kb on + strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 403,469 + AMB_RS01890 0.70 -1.6 403,487 + AMB_RS01890 0.71 +0.7 403,512 + AMB_RS01890 0.72 +0.2 403,512 + AMB_RS01890 0.72 +0.0 403,513 - AMB_RS01890 0.72 -1.2 403,580 + AMB_RS01890 0.76 -1.2 403,580 + AMB_RS01890 0.76 -1.4 403,580 + AMB_RS01890 0.76 -0.3 403,580 + AMB_RS01890 0.76 -0.2 403,580 + AMB_RS01890 0.76 -1.0 403,580 + AMB_RS01890 0.76 +0.4 403,580 + AMB_RS01890 0.76 +0.9 403,580 + AMB_RS01890 0.76 -0.7 403,580 + AMB_RS01890 0.76 -2.0 403,580 + AMB_RS01890 0.76 -0.3 403,580 + AMB_RS01890 0.76 -1.0 403,581 - AMB_RS01890 0.76 -0.2 403,581 - AMB_RS01890 0.76 +0.2 403,581 - AMB_RS01890 0.76 +0.0 403,581 - AMB_RS01890 0.76 -1.8 403,667 + AMB_RS01890 0.80 -1.7 403,668 - AMB_RS01890 0.80 +0.8 403,668 - AMB_RS01890 0.80 -1.5 403,668 - AMB_RS01890 0.80 -0.3 403,673 + AMB_RS01890 0.80 +0.9 403,673 + AMB_RS01890 0.80 -2.8 403,674 - AMB_RS01890 0.80 -1.4 403,883 + -1.4 403,884 - -0.7 404,161 + AMB_RS01895 0.46 -1.5 404,161 + AMB_RS01895 0.46 -1.0 404,208 + AMB_RS01895 0.68 +0.2 404,430 + AMB_RS01900 0.11 -1.0 404,451 + AMB_RS01900 0.12 -0.1 404,451 + AMB_RS01900 0.12 +0.6 404,823 + AMB_RS01900 0.38 -1.0 404,824 - AMB_RS01900 0.38 +1.6 404,997 + AMB_RS01900 0.50 +0.6 404,998 - AMB_RS01900 0.50 +1.2 405,039 + AMB_RS01900 0.53 +0.7 405,039 + AMB_RS01900 0.53 +0.6 405,039 + AMB_RS01900 0.53 -0.2 405,039 + AMB_RS01900 0.53 -3.5 405,039 + AMB_RS01900 0.53 -4.0 405,040 - AMB_RS01900 0.53 -1.5 405,040 - AMB_RS01900 0.53 +0.6 405,040 - AMB_RS01900 0.53 +0.5 405,040 - AMB_RS01900 0.53 -2.7 405,040 - AMB_RS01900 0.53 +0.6 405,142 + AMB_RS01900 0.60 +1.1 405,142 + AMB_RS01900 0.60 -2.9 405,142 + AMB_RS01900 0.60 -0.4 405,142 + AMB_RS01900 0.60 +1.6 405,143 - AMB_RS01900 0.61 -1.2 405,143 - AMB_RS01900 0.61 -1.7 405,143 - AMB_RS01900 0.61 -1.0 405,143 - AMB_RS01900 0.61 -0.3 405,143 - AMB_RS01900 0.61 -2.2 405,204 + AMB_RS01900 0.65 -2.0 405,204 + AMB_RS01900 0.65 -0.5 405,204 + AMB_RS01900 0.65 +1.6 405,205 - AMB_RS01900 0.65 -1.0 405,205 - AMB_RS01900 0.65 -0.2 405,262 - AMB_RS01900 0.69 +0.6 405,262 - AMB_RS01900 0.69 -0.7 405,297 + AMB_RS01900 0.71 +0.4 405,297 + AMB_RS01900 0.71 +0.6 405,298 - AMB_RS01900 0.71 -2.5 405,298 - AMB_RS01900 0.71 -1.7 405,298 - AMB_RS01900 0.71 -3.2 405,298 - AMB_RS01900 0.71 -0.3 405,403 + AMB_RS01900 0.79 +0.3 405,403 + AMB_RS01900 0.79 -1.7 405,404 - AMB_RS01900 0.79 -2.4 405,404 - AMB_RS01900 0.79 -0.7 405,444 + AMB_RS01900 0.82 +0.1 405,591 + -0.8 405,591 + +0.0 405,592 - -1.2 405,705 + -1.0 405,706 - -0.5 405,706 - +0.3 405,706 - -0.4 405,750 - +1.0 405,750 - -0.3 405,962 + AMB_RS01905 0.20 -1.0 405,963 - AMB_RS01905 0.20 -1.7 405,963 - AMB_RS01905 0.20 -2.0 406,155 - AMB_RS01905 0.36 -2.1 406,155 - AMB_RS01905 0.36 -2.2 406,155 - AMB_RS01905 0.36 +1.1 406,184 + AMB_RS01905 0.38 -0.4 406,184 + AMB_RS01905 0.38 -0.8 406,184 + AMB_RS01905 0.38 -1.5 406,184 + AMB_RS01905 0.38 +0.0 406,184 + AMB_RS01905 0.38 +0.5 406,184 + AMB_RS01905 0.38 -2.3 406,185 - AMB_RS01905 0.38 -1.2 406,185 - AMB_RS01905 0.38 -1.4 406,376 + AMB_RS01905 0.54 -0.6 406,376 + AMB_RS01905 0.54 -0.1 406,377 - AMB_RS01905 0.54 -1.0 406,455 - AMB_RS01905 0.60 +2.0 406,455 - AMB_RS01905 0.60 -0.1 406,455 - AMB_RS01905 0.60 -1.2 406,455 - AMB_RS01905 0.60 -1.4 406,686 + AMB_RS01905 0.79 +0.0 406,687 - AMB_RS01905 0.79 -2.5 406,687 - AMB_RS01905 0.79 -1.8
Or see this region's nucleotide sequence