Experiment: 30_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01820 and AMB_RS01825 are separated by 391 nucleotides AMB_RS01825 and AMB_RS01830 overlap by 4 nucleotides AMB_RS01830 and AMB_RS01835 overlap by 8 nucleotides AMB_RS01835 and AMB_RS01840 are separated by 403 nucleotides
AMB_RS01820: AMB_RS01820 - DUF3987 domain-containing protein, at 391,933 to 394,206
_RS01820
AMB_RS01825: AMB_RS01825 - hypothetical protein, at 394,598 to 395,110
_RS01825
AMB_RS01830: AMB_RS01830 - hypothetical protein, at 395,107 to 395,304
_RS01830
AMB_RS01835: AMB_RS01835 - hypothetical protein, at 395,297 to 395,788
_RS01835
AMB_RS01840: AMB_RS01840 - DNA methyltransferase, at 396,192 to 397,745
_RS01840
Position (kb) 395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 394.173 kb on - strand at 394.271 kb on + strand at 394.272 kb on - strand at 394.272 kb on - strand at 394.396 kb on + strand at 394.396 kb on + strand at 394.452 kb on + strand at 394.452 kb on + strand at 394.453 kb on - strand at 394.512 kb on + strand at 394.653 kb on + strand, within AMB_RS01825 at 394.654 kb on - strand, within AMB_RS01825 at 394.654 kb on - strand, within AMB_RS01825 at 394.769 kb on + strand, within AMB_RS01825 at 394.770 kb on - strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.833 kb on - strand, within AMB_RS01825 at 394.833 kb on - strand, within AMB_RS01825 at 394.934 kb on + strand, within AMB_RS01825 at 395.267 kb on - strand, within AMB_RS01830 at 395.393 kb on + strand, within AMB_RS01835 at 395.393 kb on + strand, within AMB_RS01835 at 395.393 kb on + strand, within AMB_RS01835 at 395.393 kb on + strand, within AMB_RS01835 at 395.393 kb on + strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.394 kb on - strand, within AMB_RS01835 at 395.426 kb on + strand, within AMB_RS01835 at 395.439 kb on - strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.601 kb on + strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.602 kb on - strand, within AMB_RS01835 at 395.626 kb on + strand, within AMB_RS01835 at 395.626 kb on + strand, within AMB_RS01835 at 395.626 kb on + strand, within AMB_RS01835 at 395.627 kb on - strand, within AMB_RS01835 at 395.628 kb on - strand, within AMB_RS01835 at 395.639 kb on + strand, within AMB_RS01835 at 395.640 kb on - strand, within AMB_RS01835 at 395.640 kb on - strand, within AMB_RS01835 at 395.640 kb on - strand, within AMB_RS01835 at 395.790 kb on - strand at 395.927 kb on + strand at 395.927 kb on + strand at 395.927 kb on + strand at 395.927 kb on + strand at 395.928 kb on - strand at 395.928 kb on - strand at 395.928 kb on - strand at 395.928 kb on - strand at 395.972 kb on + strand at 395.972 kb on + strand at 395.972 kb on + strand at 395.973 kb on - strand at 395.973 kb on - strand at 396.033 kb on + strand at 396.033 kb on + strand at 396.270 kb on + strand at 396.270 kb on + strand at 396.271 kb on - strand at 396.271 kb on - strand at 396.271 kb on - strand at 396.271 kb on - strand at 396.271 kb on - strand at 396.271 kb on - strand at 396.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_3 remove 394,173 - -2.4 394,271 + -0.5 394,272 - +0.1 394,272 - +1.0 394,396 + -1.4 394,396 + -0.9 394,452 + -0.7 394,452 + +0.3 394,453 - -0.2 394,512 + +0.3 394,653 + AMB_RS01825 0.11 -2.5 394,654 - AMB_RS01825 0.11 -0.9 394,654 - AMB_RS01825 0.11 -0.2 394,769 + AMB_RS01825 0.33 +0.1 394,770 - AMB_RS01825 0.34 +1.6 394,832 + AMB_RS01825 0.46 -0.9 394,832 + AMB_RS01825 0.46 -1.9 394,832 + AMB_RS01825 0.46 +0.0 394,833 - AMB_RS01825 0.46 +0.1 394,833 - AMB_RS01825 0.46 -0.0 394,934 + AMB_RS01825 0.65 -1.8 395,267 - AMB_RS01830 0.81 -1.5 395,393 + AMB_RS01835 0.20 -2.0 395,393 + AMB_RS01835 0.20 -0.1 395,393 + AMB_RS01835 0.20 +0.0 395,393 + AMB_RS01835 0.20 +1.4 395,393 + AMB_RS01835 0.20 +0.5 395,394 - AMB_RS01835 0.20 +0.4 395,394 - AMB_RS01835 0.20 -0.0 395,394 - AMB_RS01835 0.20 -1.4 395,394 - AMB_RS01835 0.20 -1.5 395,394 - AMB_RS01835 0.20 +0.0 395,394 - AMB_RS01835 0.20 -1.0 395,394 - AMB_RS01835 0.20 -0.7 395,394 - AMB_RS01835 0.20 -1.8 395,426 + AMB_RS01835 0.26 -0.8 395,439 - AMB_RS01835 0.29 -1.0 395,601 + AMB_RS01835 0.62 -0.1 395,601 + AMB_RS01835 0.62 -0.8 395,601 + AMB_RS01835 0.62 +0.6 395,601 + AMB_RS01835 0.62 +1.2 395,601 + AMB_RS01835 0.62 +0.5 395,601 + AMB_RS01835 0.62 +0.2 395,601 + AMB_RS01835 0.62 +0.1 395,602 - AMB_RS01835 0.62 +0.3 395,602 - AMB_RS01835 0.62 +0.6 395,602 - AMB_RS01835 0.62 +1.2 395,602 - AMB_RS01835 0.62 -0.4 395,602 - AMB_RS01835 0.62 +3.3 395,602 - AMB_RS01835 0.62 +0.0 395,626 + AMB_RS01835 0.67 +0.5 395,626 + AMB_RS01835 0.67 -0.2 395,626 + AMB_RS01835 0.67 -1.8 395,627 - AMB_RS01835 0.67 +0.1 395,628 - AMB_RS01835 0.67 +0.0 395,639 + AMB_RS01835 0.70 -0.4 395,640 - AMB_RS01835 0.70 -0.2 395,640 - AMB_RS01835 0.70 -2.8 395,640 - AMB_RS01835 0.70 -0.5 395,790 - +0.0 395,927 + -1.8 395,927 + -2.8 395,927 + +0.2 395,927 + +0.0 395,928 - -0.9 395,928 - +0.6 395,928 - -1.7 395,928 - -1.0 395,972 + +0.2 395,972 + -0.6 395,972 + -1.5 395,973 - -2.0 395,973 - +1.0 396,033 + -2.0 396,033 + -1.2 396,270 + -0.4 396,270 + -1.2 396,271 - +1.3 396,271 - +0.9 396,271 - +0.0 396,271 - +0.2 396,271 - -3.3 396,271 - -2.0 396,271 - +0.4
Or see this region's nucleotide sequence