Strain Fitness in Escherichia coli BW25113 around b2671

Experiment: Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygaW and ygaC are separated by 36 nucleotidesygaC and ygaM are separated by 139 nucleotidesygaM and nrdH are separated by 247 nucleotidesnrdH and nrdI overlap by 4 nucleotides b2670: ygaW - predicted inner membrane protein (NCBI), at 2,797,186 to 2,797,635 ygaW b2671: ygaC - hypothetical protein (NCBI), at 2,797,672 to 2,798,016 ygaC b2672: ygaM - orf, hypothetical protein (VIMSS), at 2,798,156 to 2,798,497 ygaM b2673: nrdH - glutaredoxin-like protein (NCBI), at 2,798,745 to 2,798,990 nrdH b2674: nrdI - hypothetical protein (NCBI), at 2,798,987 to 2,799,397 nrdI Position (kb) 2797 2798 2799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2796.709 kb on - strandat 2796.709 kb on - strandat 2796.718 kb on - strandat 2796.718 kb on - strandat 2796.718 kb on - strandat 2796.728 kb on - strandat 2796.733 kb on - strandat 2796.742 kb on - strandat 2796.742 kb on - strandat 2796.742 kb on - strandat 2796.882 kb on - strandat 2796.891 kb on + strandat 2797.102 kb on - strandat 2797.199 kb on + strandat 2797.199 kb on + strandat 2797.240 kb on + strand, within ygaWat 2797.303 kb on - strand, within ygaWat 2797.303 kb on - strand, within ygaWat 2797.323 kb on + strand, within ygaWat 2797.323 kb on + strand, within ygaWat 2797.362 kb on + strand, within ygaWat 2797.362 kb on + strand, within ygaWat 2797.364 kb on + strand, within ygaWat 2797.364 kb on + strand, within ygaWat 2797.364 kb on - strand, within ygaWat 2797.369 kb on - strand, within ygaWat 2797.369 kb on - strand, within ygaWat 2797.482 kb on + strand, within ygaWat 2797.482 kb on + strand, within ygaWat 2797.484 kb on + strand, within ygaWat 2797.492 kb on - strand, within ygaWat 2797.512 kb on + strand, within ygaWat 2797.512 kb on + strand, within ygaWat 2797.607 kb on - strandat 2797.607 kb on - strandat 2797.612 kb on - strandat 2797.612 kb on - strandat 2797.613 kb on - strandat 2797.733 kb on - strand, within ygaCat 2797.733 kb on - strand, within ygaCat 2797.739 kb on - strand, within ygaCat 2797.777 kb on - strand, within ygaCat 2797.841 kb on - strand, within ygaCat 2797.841 kb on - strand, within ygaCat 2797.872 kb on + strand, within ygaCat 2797.879 kb on - strand, within ygaCat 2797.882 kb on + strand, within ygaCat 2797.888 kb on - strand, within ygaCat 2797.888 kb on - strand, within ygaCat 2797.888 kb on - strand, within ygaCat 2797.935 kb on - strand, within ygaCat 2797.941 kb on + strand, within ygaCat 2798.044 kb on + strandat 2798.044 kb on + strandat 2798.048 kb on + strandat 2798.049 kb on + strandat 2798.049 kb on + strandat 2798.216 kb on + strand, within ygaMat 2798.340 kb on + strand, within ygaMat 2798.387 kb on + strand, within ygaMat 2798.395 kb on - strand, within ygaMat 2798.427 kb on + strand, within ygaMat 2798.481 kb on - strandat 2798.481 kb on - strandat 2798.600 kb on + strandat 2798.614 kb on - strandat 2798.834 kb on + strand, within nrdHat 2798.849 kb on + strand, within nrdHat 2798.917 kb on + strand, within nrdHat 2798.917 kb on + strand, within nrdHat 2798.983 kb on + strandat 2798.983 kb on + strandat 2798.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 10 vol%
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2,796,709 - +0.2
2,796,709 - -1.3
2,796,718 - +0.6
2,796,718 - -0.2
2,796,718 - +0.4
2,796,728 - +0.4
2,796,733 - -0.9
2,796,742 - +1.1
2,796,742 - -0.2
2,796,742 - -0.8
2,796,882 - +0.3
2,796,891 + -0.6
2,797,102 - -0.6
2,797,199 + +0.6
2,797,199 + +1.4
2,797,240 + ygaW b2670 0.12 -0.0
2,797,303 - ygaW b2670 0.26 +0.5
2,797,303 - ygaW b2670 0.26 +0.0
2,797,323 + ygaW b2670 0.30 +0.8
2,797,323 + ygaW b2670 0.30 +0.4
2,797,362 + ygaW b2670 0.39 +0.2
2,797,362 + ygaW b2670 0.39 -0.8
2,797,364 + ygaW b2670 0.40 -0.5
2,797,364 + ygaW b2670 0.40 +0.8
2,797,364 - ygaW b2670 0.40 +0.2
2,797,369 - ygaW b2670 0.41 +0.7
2,797,369 - ygaW b2670 0.41 -0.0
2,797,482 + ygaW b2670 0.66 -0.4
2,797,482 + ygaW b2670 0.66 -0.2
2,797,484 + ygaW b2670 0.66 +1.8
2,797,492 - ygaW b2670 0.68 -0.2
2,797,512 + ygaW b2670 0.72 +0.5
2,797,512 + ygaW b2670 0.72 -0.2
2,797,607 - -0.1
2,797,607 - -0.3
2,797,612 - +0.2
2,797,612 - -0.0
2,797,613 - +2.2
2,797,733 - ygaC b2671 0.18 -0.2
2,797,733 - ygaC b2671 0.18 +0.4
2,797,739 - ygaC b2671 0.19 +0.3
2,797,777 - ygaC b2671 0.30 +0.6
2,797,841 - ygaC b2671 0.49 -0.1
2,797,841 - ygaC b2671 0.49 +2.4
2,797,872 + ygaC b2671 0.58 +1.2
2,797,879 - ygaC b2671 0.60 +1.0
2,797,882 + ygaC b2671 0.61 +0.3
2,797,888 - ygaC b2671 0.63 -0.7
2,797,888 - ygaC b2671 0.63 +0.5
2,797,888 - ygaC b2671 0.63 +0.8
2,797,935 - ygaC b2671 0.76 +0.5
2,797,941 + ygaC b2671 0.78 +0.4
2,798,044 + -0.8
2,798,044 + +0.5
2,798,048 + +0.4
2,798,049 + -0.2
2,798,049 + +2.8
2,798,216 + ygaM b2672 0.18 -0.2
2,798,340 + ygaM b2672 0.54 -0.5
2,798,387 + ygaM b2672 0.68 -0.1
2,798,395 - ygaM b2672 0.70 -1.2
2,798,427 + ygaM b2672 0.79 +0.8
2,798,481 - +0.1
2,798,481 - +0.2
2,798,600 + +0.6
2,798,614 - -0.4
2,798,834 + nrdH b2673 0.36 -3.5
2,798,849 + nrdH b2673 0.42 -0.4
2,798,917 + nrdH b2673 0.70 +0.3
2,798,917 + nrdH b2673 0.70 +0.4
2,798,983 + -0.2
2,798,983 + -0.0
2,798,991 - -0.4

Or see this region's nucleotide sequence