Strain Fitness in Escherichia coli BW25113 around b0812
Experiment: Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 10 vol% |
---|---|---|---|---|---|
remove | |||||
846,658 | - | glnH | b0811 | 0.24 | -0.2 |
846,694 | + | glnH | b0811 | 0.29 | -0.8 |
846,727 | - | glnH | b0811 | 0.33 | +0.7 |
846,729 | + | glnH | b0811 | 0.33 | +0.4 |
846,731 | + | glnH | b0811 | 0.33 | +0.1 |
846,734 | - | glnH | b0811 | 0.34 | -0.9 |
846,745 | - | glnH | b0811 | 0.35 | -1.2 |
846,745 | - | glnH | b0811 | 0.35 | +0.8 |
846,812 | - | glnH | b0811 | 0.44 | +0.3 |
846,817 | + | glnH | b0811 | 0.45 | +0.5 |
846,817 | + | glnH | b0811 | 0.45 | -0.4 |
847,125 | + | glnH | b0811 | 0.86 | -0.4 |
847,125 | + | glnH | b0811 | 0.86 | -0.4 |
847,218 | - | +1.4 | |||
847,218 | - | +0.2 | |||
847,222 | + | +0.8 | |||
847,413 | + | +0.2 | |||
847,599 | + | +0.2 | |||
847,608 | + | -0.5 | |||
847,608 | + | -0.7 | |||
847,766 | - | dps | b0812 | 0.27 | +0.6 |
847,861 | + | dps | b0812 | 0.46 | -0.9 |
847,887 | - | dps | b0812 | 0.51 | -0.4 |
847,918 | - | dps | b0812 | 0.57 | -0.2 |
847,970 | + | dps | b0812 | 0.67 | -0.5 |
848,006 | - | dps | b0812 | 0.74 | +0.2 |
848,009 | - | dps | b0812 | 0.75 | +0.6 |
848,009 | - | dps | b0812 | 0.75 | +0.4 |
848,033 | + | dps | b0812 | 0.80 | -0.3 |
848,041 | + | dps | b0812 | 0.81 | -0.8 |
848,041 | + | dps | b0812 | 0.81 | -0.2 |
848,066 | + | dps | b0812 | 0.86 | +0.8 |
848,072 | - | dps | b0812 | 0.88 | +0.8 |
848,074 | - | dps | b0812 | 0.88 | +0.1 |
848,076 | + | dps | b0812 | 0.88 | +1.1 |
848,182 | + | -0.8 | |||
848,192 | + | -0.3 | |||
848,207 | - | +0.4 | |||
848,207 | - | +0.2 | |||
848,208 | + | -0.6 | |||
848,208 | + | +0.6 | |||
848,208 | + | +0.8 | |||
848,208 | + | +0.2 | |||
848,216 | - | +0.3 | |||
848,216 | - | +1.5 | |||
848,216 | - | +0.2 | |||
848,216 | - | -0.5 | |||
848,221 | + | +1.5 | |||
848,227 | + | +2.0 | |||
848,361 | + | +0.6 | |||
848,361 | + | -0.0 | |||
848,402 | - | +1.1 | |||
848,402 | - | +2.8 | |||
848,404 | + | +0.2 | |||
848,415 | - | +0.5 | |||
848,442 | + | +1.8 | |||
848,465 | + | +0.1 | |||
848,471 | - | +0.5 | |||
848,482 | - | -0.6 | |||
848,483 | - | +0.8 | |||
848,484 | - | -0.7 | |||
848,485 | - | -0.2 | |||
848,488 | - | +0.0 | |||
848,488 | - | -0.1 | |||
848,497 | - | +0.3 | |||
848,499 | + | +0.2 | |||
848,525 | + | rhtA | b0813 | 0.10 | -0.8 |
848,525 | + | rhtA | b0813 | 0.10 | +0.2 |
848,526 | + | rhtA | b0813 | 0.10 | -0.0 |
848,532 | - | rhtA | b0813 | 0.11 | -0.3 |
848,533 | - | rhtA | b0813 | 0.11 | -0.3 |
848,695 | - | rhtA | b0813 | 0.30 | +0.1 |
848,695 | - | rhtA | b0813 | 0.30 | -0.6 |
848,695 | - | rhtA | b0813 | 0.30 | -1.0 |
848,717 | - | rhtA | b0813 | 0.32 | -0.2 |
848,717 | - | rhtA | b0813 | 0.32 | +0.5 |
848,717 | - | rhtA | b0813 | 0.32 | +0.5 |
848,718 | + | rhtA | b0813 | 0.32 | +0.2 |
848,718 | + | rhtA | b0813 | 0.32 | +0.2 |
848,772 | - | rhtA | b0813 | 0.38 | +0.8 |
848,772 | - | rhtA | b0813 | 0.38 | +0.5 |
848,796 | + | rhtA | b0813 | 0.41 | -0.0 |
848,809 | - | rhtA | b0813 | 0.42 | +0.2 |
848,809 | - | rhtA | b0813 | 0.42 | -0.8 |
848,905 | - | rhtA | b0813 | 0.53 | -0.7 |
848,991 | + | rhtA | b0813 | 0.63 | -1.4 |
848,991 | + | rhtA | b0813 | 0.63 | -0.2 |
849,017 | - | rhtA | b0813 | 0.66 | +0.8 |
849,017 | - | rhtA | b0813 | 0.66 | +0.2 |
849,028 | - | rhtA | b0813 | 0.67 | +0.4 |
849,108 | + | rhtA | b0813 | 0.76 | +0.4 |
Or see this region's nucleotide sequence