Experiment: Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgO and ybgP overlap by 4 nucleotides ybgP and ybgQ are separated by 14 nucleotides ybgQ and ybgD are separated by 59 nucleotides
b0716: ybgO - orf, hypothetical protein (VIMSS), at 747,144 to 748,205
ybgO
b0717: ybgP - predicted assembly protein (NCBI), at 748,202 to 748,930
ybgP
b0718: ybgQ - putative outer membrane protein (VIMSS), at 748,945 to 751,392
ybgQ
b0719: ybgD - predicted fimbrial-like adhesin protein (NCBI), at 751,452 to 752,018
ybgD
Position (kb) 748
749
750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.958 kb on + strand, within ybgO at 747.960 kb on - strand, within ybgO at 748.262 kb on - strand at 748.367 kb on - strand, within ybgP at 748.367 kb on - strand, within ybgP at 748.471 kb on + strand, within ybgP at 748.526 kb on - strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.569 kb on - strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.651 kb on - strand, within ybgP at 748.668 kb on + strand, within ybgP at 748.792 kb on - strand, within ybgP at 748.954 kb on + strand at 748.954 kb on + strand at 749.016 kb on + strand at 749.016 kb on + strand at 749.021 kb on + strand at 749.029 kb on - strand at 749.097 kb on + strand at 749.143 kb on + strand at 749.143 kb on + strand at 749.259 kb on + strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.300 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.363 kb on + strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.562 kb on + strand, within ybgQ at 749.593 kb on - strand, within ybgQ at 749.680 kb on - strand, within ybgQ at 749.695 kb on - strand, within ybgQ at 749.706 kb on - strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.805 kb on - strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.912 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ at 750.124 kb on + strand, within ybgQ at 750.129 kb on + strand, within ybgQ at 750.160 kb on - strand, within ybgQ at 750.263 kb on - strand, within ybgQ at 750.273 kb on - strand, within ybgQ at 750.273 kb on - strand, within ybgQ at 750.374 kb on - strand, within ybgQ at 750.374 kb on - strand, within ybgQ at 750.432 kb on + strand, within ybgQ at 750.461 kb on - strand, within ybgQ at 750.471 kb on - strand, within ybgQ at 750.477 kb on + strand, within ybgQ at 750.570 kb on + strand, within ybgQ at 750.573 kb on - strand, within ybgQ at 750.604 kb on - strand, within ybgQ at 750.640 kb on - strand, within ybgQ at 750.706 kb on - strand, within ybgQ at 750.706 kb on - strand, within ybgQ at 750.743 kb on - strand, within ybgQ at 750.807 kb on - strand, within ybgQ at 750.847 kb on + strand, within ybgQ at 750.847 kb on + strand, within ybgQ at 750.853 kb on - strand, within ybgQ at 750.869 kb on - strand, within ybgQ at 750.869 kb on - strand, within ybgQ at 750.874 kb on + strand, within ybgQ at 750.879 kb on - strand, within ybgQ at 750.882 kb on + strand, within ybgQ at 750.932 kb on - strand, within ybgQ at 750.948 kb on + strand, within ybgQ at 750.958 kb on - strand, within ybgQ at 750.958 kb on - strand, within ybgQ at 750.971 kb on + strand, within ybgQ at 750.986 kb on + strand, within ybgQ at 750.991 kb on + strand, within ybgQ at 751.065 kb on + strand, within ybgQ at 751.074 kb on + strand, within ybgQ at 751.077 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.078 kb on + strand, within ybgQ at 751.088 kb on + strand, within ybgQ at 751.088 kb on + strand, within ybgQ at 751.093 kb on + strand, within ybgQ at 751.102 kb on + strand, within ybgQ at 751.134 kb on + strand, within ybgQ at 751.156 kb on + strand at 751.202 kb on + strand at 751.337 kb on + strand at 751.342 kb on + strand at 751.348 kb on + strand at 751.348 kb on + strand at 751.349 kb on + strand at 751.349 kb on + strand at 751.357 kb on - strand at 751.357 kb on - strand at 751.358 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.363 kb on + strand at 751.396 kb on + strand at 751.396 kb on + strand at 751.404 kb on - strand at 751.463 kb on - strand at 751.479 kb on - strand at 751.490 kb on - strand at 751.495 kb on - strand at 751.497 kb on - strand at 751.524 kb on - strand, within ybgD at 751.526 kb on - strand, within ybgD at 751.548 kb on - strand, within ybgD at 751.559 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.564 kb on - strand, within ybgD at 751.585 kb on - strand, within ybgD at 751.594 kb on + strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.607 kb on - strand, within ybgD at 751.611 kb on - strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.634 kb on + strand, within ybgD at 751.637 kb on - strand, within ybgD at 751.640 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.642 kb on - strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.644 kb on + strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.666 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.672 kb on - strand, within ybgD at 751.693 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.707 kb on - strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.712 kb on + strand, within ybgD at 751.721 kb on - strand, within ybgD at 751.750 kb on - strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.757 kb on + strand, within ybgD at 751.772 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.791 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.794 kb on + strand, within ybgD at 751.805 kb on + strand, within ybgD at 751.813 kb on + strand, within ybgD at 751.827 kb on + strand, within ybgD at 751.829 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.840 kb on + strand, within ybgD at 751.850 kb on + strand, within ybgD at 751.909 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.915 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.938 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.951 kb on + strand, within ybgD at 751.952 kb on + strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.959 kb on - strand, within ybgD at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.966 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.968 kb on + strand at 751.976 kb on + strand at 751.976 kb on - strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.978 kb on + strand at 751.981 kb on - strand at 751.981 kb on - strand at 751.983 kb on + strand at 752.008 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.013 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.034 kb on + strand at 752.035 kb on + strand at 752.036 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.041 kb on + strand at 752.192 kb on - strand at 752.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 10 vol% remove 747,957 + ybgO b0716 0.77 -1.2 747,957 + ybgO b0716 0.77 -0.6 747,957 + ybgO b0716 0.77 +0.1 747,958 + ybgO b0716 0.77 +0.1 747,960 - ybgO b0716 0.77 -0.2 748,262 - -0.8 748,367 - ybgP b0717 0.23 +0.4 748,367 - ybgP b0717 0.23 +0.8 748,471 + ybgP b0717 0.37 -1.9 748,526 - ybgP b0717 0.44 +2.7 748,550 + ybgP b0717 0.48 +0.2 748,550 + ybgP b0717 0.48 +0.6 748,569 - ybgP b0717 0.50 +0.5 748,606 + ybgP b0717 0.55 +1.8 748,606 + ybgP b0717 0.55 -0.2 748,651 - ybgP b0717 0.62 -0.9 748,668 + ybgP b0717 0.64 -0.5 748,792 - ybgP b0717 0.81 +0.5 748,954 + -0.8 748,954 + +0.3 749,016 + +0.5 749,016 + +0.4 749,021 + -0.1 749,029 - +0.5 749,097 + +0.2 749,143 + +0.8 749,143 + -0.0 749,259 + ybgQ b0718 0.13 -0.5 749,278 - ybgQ b0718 0.14 -1.0 749,278 - ybgQ b0718 0.14 +0.8 749,300 + ybgQ b0718 0.15 -0.3 749,307 + ybgQ b0718 0.15 -0.9 749,307 + ybgQ b0718 0.15 -0.8 749,308 - ybgQ b0718 0.15 +0.1 749,308 - ybgQ b0718 0.15 -2.4 749,363 + ybgQ b0718 0.17 -0.5 749,511 - ybgQ b0718 0.23 -0.1 749,511 - ybgQ b0718 0.23 -0.2 749,562 + ybgQ b0718 0.25 +0.3 749,593 - ybgQ b0718 0.26 -0.9 749,680 - ybgQ b0718 0.30 -0.2 749,695 - ybgQ b0718 0.31 -0.0 749,706 - ybgQ b0718 0.31 -1.3 749,764 + ybgQ b0718 0.33 +1.0 749,764 + ybgQ b0718 0.33 -2.4 749,805 - ybgQ b0718 0.35 +0.1 749,861 + ybgQ b0718 0.37 +0.4 749,861 + ybgQ b0718 0.37 +0.4 749,912 + ybgQ b0718 0.40 +0.2 749,929 + ybgQ b0718 0.40 -1.1 749,929 + ybgQ b0718 0.40 -0.2 750,124 + ybgQ b0718 0.48 -0.4 750,129 + ybgQ b0718 0.48 +0.2 750,160 - ybgQ b0718 0.50 -1.2 750,263 - ybgQ b0718 0.54 -0.4 750,273 - ybgQ b0718 0.54 +0.4 750,273 - ybgQ b0718 0.54 -0.1 750,374 - ybgQ b0718 0.58 -0.2 750,374 - ybgQ b0718 0.58 -0.4 750,432 + ybgQ b0718 0.61 -0.4 750,461 - ybgQ b0718 0.62 +0.3 750,471 - ybgQ b0718 0.62 -0.1 750,477 + ybgQ b0718 0.63 -0.8 750,570 + ybgQ b0718 0.66 +0.3 750,573 - ybgQ b0718 0.67 -0.0 750,604 - ybgQ b0718 0.68 -0.5 750,640 - ybgQ b0718 0.69 +0.0 750,706 - ybgQ b0718 0.72 -1.2 750,706 - ybgQ b0718 0.72 -0.5 750,743 - ybgQ b0718 0.73 +1.2 750,807 - ybgQ b0718 0.76 +0.0 750,847 + ybgQ b0718 0.78 +0.1 750,847 + ybgQ b0718 0.78 +0.3 750,853 - ybgQ b0718 0.78 -0.7 750,869 - ybgQ b0718 0.79 +0.1 750,869 - ybgQ b0718 0.79 +0.8 750,874 + ybgQ b0718 0.79 +0.7 750,879 - ybgQ b0718 0.79 -0.0 750,882 + ybgQ b0718 0.79 +0.1 750,932 - ybgQ b0718 0.81 -0.2 750,948 + ybgQ b0718 0.82 +1.2 750,958 - ybgQ b0718 0.82 -0.5 750,958 - ybgQ b0718 0.82 +0.2 750,971 + ybgQ b0718 0.83 -1.0 750,986 + ybgQ b0718 0.83 -0.4 750,991 + ybgQ b0718 0.84 -0.6 751,065 + ybgQ b0718 0.87 -0.0 751,074 + ybgQ b0718 0.87 -1.2 751,077 + ybgQ b0718 0.87 -0.2 751,078 + ybgQ b0718 0.87 -0.1 751,078 + ybgQ b0718 0.87 +0.1 751,078 + ybgQ b0718 0.87 -0.4 751,088 + ybgQ b0718 0.88 +0.5 751,088 + ybgQ b0718 0.88 -0.3 751,093 + ybgQ b0718 0.88 -0.8 751,102 + ybgQ b0718 0.88 -0.5 751,134 + ybgQ b0718 0.89 +0.6 751,156 + +1.1 751,202 + +0.4 751,337 + +0.5 751,342 + +0.2 751,348 + +1.4 751,348 + -0.8 751,349 + +0.7 751,349 + +1.5 751,357 - -2.4 751,357 - -1.4 751,358 + -0.8 751,363 + -0.5 751,363 + +0.3 751,363 + +0.7 751,363 + -0.9 751,363 + -0.2 751,363 + +0.6 751,363 + -0.1 751,363 + +0.5 751,363 + -0.2 751,363 + -0.2 751,363 + -0.4 751,396 + +0.6 751,396 + +0.3 751,404 - -1.4 751,463 - +0.8 751,479 - +0.5 751,490 - -0.4 751,495 - +0.6 751,497 - +0.1 751,524 - ybgD b0719 0.13 -0.4 751,526 - ybgD b0719 0.13 +0.2 751,548 - ybgD b0719 0.17 +1.0 751,559 - ybgD b0719 0.19 +0.5 751,564 - ybgD b0719 0.20 +0.0 751,564 - ybgD b0719 0.20 -0.2 751,564 - ybgD b0719 0.20 -0.2 751,564 - ybgD b0719 0.20 -1.3 751,585 - ybgD b0719 0.23 +0.2 751,594 + ybgD b0719 0.25 -0.1 751,607 - ybgD b0719 0.27 +0.9 751,607 - ybgD b0719 0.27 +0.9 751,611 - ybgD b0719 0.28 -0.7 751,634 + ybgD b0719 0.32 -0.5 751,634 + ybgD b0719 0.32 +0.2 751,637 - ybgD b0719 0.33 -0.0 751,640 - ybgD b0719 0.33 -0.7 751,642 - ybgD b0719 0.34 -0.0 751,642 - ybgD b0719 0.34 +0.6 751,642 - ybgD b0719 0.34 -1.5 751,642 - ybgD b0719 0.34 +0.8 751,642 - ybgD b0719 0.34 -0.5 751,642 - ybgD b0719 0.34 -0.2 751,644 + ybgD b0719 0.34 +0.3 751,644 + ybgD b0719 0.34 +0.0 751,666 - ybgD b0719 0.38 -0.9 751,666 - ybgD b0719 0.38 -0.3 751,672 - ybgD b0719 0.39 -0.4 751,672 - ybgD b0719 0.39 -0.1 751,672 - ybgD b0719 0.39 -0.3 751,693 - ybgD b0719 0.43 -0.0 751,707 - ybgD b0719 0.45 -0.4 751,707 - ybgD b0719 0.45 +0.5 751,707 - ybgD b0719 0.45 +1.4 751,712 + ybgD b0719 0.46 +0.4 751,712 + ybgD b0719 0.46 -1.2 751,721 - ybgD b0719 0.47 -0.5 751,750 - ybgD b0719 0.53 +0.0 751,757 + ybgD b0719 0.54 +0.3 751,757 + ybgD b0719 0.54 +1.2 751,772 + ybgD b0719 0.56 -0.8 751,791 + ybgD b0719 0.60 +0.8 751,791 + ybgD b0719 0.60 +2.0 751,794 + ybgD b0719 0.60 -0.1 751,794 + ybgD b0719 0.60 -0.6 751,805 + ybgD b0719 0.62 -0.5 751,813 + ybgD b0719 0.64 -0.2 751,827 + ybgD b0719 0.66 -0.1 751,829 + ybgD b0719 0.66 -1.3 751,840 + ybgD b0719 0.68 +0.8 751,840 + ybgD b0719 0.68 -0.1 751,840 + ybgD b0719 0.68 -1.0 751,850 + ybgD b0719 0.70 -0.1 751,909 + ybgD b0719 0.81 +0.7 751,915 + ybgD b0719 0.82 +0.5 751,915 + ybgD b0719 0.82 -1.1 751,938 + ybgD b0719 0.86 -1.0 751,938 + ybgD b0719 0.86 +0.9 751,951 + ybgD b0719 0.88 -0.1 751,951 + ybgD b0719 0.88 +0.7 751,951 + ybgD b0719 0.88 +0.4 751,951 + ybgD b0719 0.88 -0.4 751,951 + ybgD b0719 0.88 -0.8 751,951 + ybgD b0719 0.88 +0.4 751,951 + ybgD b0719 0.88 -1.0 751,952 + ybgD b0719 0.88 -0.5 751,959 - ybgD b0719 0.89 -0.2 751,959 - ybgD b0719 0.89 +0.5 751,959 - ybgD b0719 0.89 -0.7 751,966 + -1.2 751,966 + -0.1 751,966 + +1.3 751,966 + -0.3 751,968 + +1.4 751,968 + -0.4 751,968 + -0.1 751,976 + +0.4 751,976 - +0.1 751,978 + +1.1 751,978 + -0.5 751,978 + -0.5 751,978 + +0.6 751,978 + +0.3 751,978 + -0.8 751,978 + -0.4 751,981 - -0.2 751,981 - -0.1 751,983 + +0.0 752,008 + +0.5 752,013 + -0.6 752,013 + +0.4 752,013 + -1.5 752,013 + -0.2 752,034 + -0.1 752,034 + -0.2 752,034 + +0.6 752,035 + -0.4 752,036 + +0.1 752,041 + -0.6 752,041 + +0.6 752,041 + +0.5 752,192 - -0.4 752,350 - +0.1
Or see this region's nucleotide sequence