Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_94

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_93 and PfGW456L13_94 are separated by 21 nucleotidesPfGW456L13_94 and PfGW456L13_95 are separated by 27 nucleotides PfGW456L13_93 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 108,433 to 109,560 _93 PfGW456L13_94 - Chaperone-modulator protein CbpM, at 109,582 to 109,887 _94 PfGW456L13_95 - DnaJ-class molecular chaperone CbpA, at 109,915 to 110,877 _95 Position (kb) 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 108.799 kb on + strand, within PfGW456L13_93at 108.799 kb on + strand, within PfGW456L13_93at 108.799 kb on + strand, within PfGW456L13_93at 108.800 kb on - strand, within PfGW456L13_93at 108.865 kb on + strand, within PfGW456L13_93at 108.866 kb on - strand, within PfGW456L13_93at 108.866 kb on - strand, within PfGW456L13_93at 108.866 kb on - strand, within PfGW456L13_93at 108.866 kb on - strand, within PfGW456L13_93at 108.962 kb on + strand, within PfGW456L13_93at 108.963 kb on - strand, within PfGW456L13_93at 108.963 kb on - strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.193 kb on + strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.194 kb on - strand, within PfGW456L13_93at 109.431 kb on + strand, within PfGW456L13_93at 109.432 kb on - strand, within PfGW456L13_93at 109.434 kb on + strand, within PfGW456L13_93at 109.434 kb on + strand, within PfGW456L13_93at 109.533 kb on + strandat 109.534 kb on - strandat 109.743 kb on - strand, within PfGW456L13_94at 109.817 kb on + strand, within PfGW456L13_94at 109.818 kb on - strand, within PfGW456L13_94at 109.818 kb on - strand, within PfGW456L13_94at 109.818 kb on - strand, within PfGW456L13_94at 109.818 kb on - strand, within PfGW456L13_94at 109.818 kb on - strand, within PfGW456L13_94at 109.887 kb on + strandat 109.887 kb on + strandat 109.888 kb on - strandat 109.888 kb on - strandat 109.888 kb on - strandat 110.249 kb on + strand, within PfGW456L13_95at 110.250 kb on - strand, within PfGW456L13_95at 110.250 kb on - strand, within PfGW456L13_95at 110.390 kb on + strand, within PfGW456L13_95at 110.391 kb on - strand, within PfGW456L13_95at 110.398 kb on + strand, within PfGW456L13_95at 110.399 kb on - strand, within PfGW456L13_95at 110.399 kb on - strand, within PfGW456L13_95at 110.399 kb on - strand, within PfGW456L13_95at 110.669 kb on + strand, within PfGW456L13_95at 110.669 kb on + strand, within PfGW456L13_95at 110.705 kb on + strand, within PfGW456L13_95at 110.706 kb on - strand, within PfGW456L13_95at 110.706 kb on - strand, within PfGW456L13_95at 110.706 kb on - strand, within PfGW456L13_95at 110.706 kb on - strand, within PfGW456L13_95at 110.706 kb on - strand, within PfGW456L13_95at 110.768 kb on + strand, within PfGW456L13_95at 110.768 kb on + strand, within PfGW456L13_95at 110.768 kb on + strand, within PfGW456L13_95at 110.768 kb on + strand, within PfGW456L13_95at 110.843 kb on + strandat 110.843 kb on + strandat 110.843 kb on + strandat 110.843 kb on + strandat 110.843 kb on + strandat 110.843 kb on + strandat 110.844 kb on - strandat 110.844 kb on - strandat 110.846 kb on + strandat 110.847 kb on - strandat 110.847 kb on - strandat 110.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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108,799 + PfGW456L13_93 0.32 +0.4
108,799 + PfGW456L13_93 0.32 +1.5
108,799 + PfGW456L13_93 0.32 -0.8
108,800 - PfGW456L13_93 0.33 +0.3
108,865 + PfGW456L13_93 0.38 +1.8
108,866 - PfGW456L13_93 0.38 +0.1
108,866 - PfGW456L13_93 0.38 +1.9
108,866 - PfGW456L13_93 0.38 +1.0
108,866 - PfGW456L13_93 0.38 -2.3
108,962 + PfGW456L13_93 0.47 -0.4
108,963 - PfGW456L13_93 0.47 -1.5
108,963 - PfGW456L13_93 0.47 +1.7
109,193 + PfGW456L13_93 0.67 -0.0
109,193 + PfGW456L13_93 0.67 -0.2
109,193 + PfGW456L13_93 0.67 +0.1
109,193 + PfGW456L13_93 0.67 +0.9
109,193 + PfGW456L13_93 0.67 -2.0
109,193 + PfGW456L13_93 0.67 +0.5
109,193 + PfGW456L13_93 0.67 -0.9
109,193 + PfGW456L13_93 0.67 +0.7
109,193 + PfGW456L13_93 0.67 +0.8
109,194 - PfGW456L13_93 0.67 -0.3
109,194 - PfGW456L13_93 0.67 +0.9
109,194 - PfGW456L13_93 0.67 -0.1
109,194 - PfGW456L13_93 0.67 +1.4
109,194 - PfGW456L13_93 0.67 +1.8
109,194 - PfGW456L13_93 0.67 +0.5
109,194 - PfGW456L13_93 0.67 +0.4
109,194 - PfGW456L13_93 0.67 -0.2
109,431 + PfGW456L13_93 0.88 +1.0
109,432 - PfGW456L13_93 0.89 -1.4
109,434 + PfGW456L13_93 0.89 +0.7
109,434 + PfGW456L13_93 0.89 -0.0
109,533 + -0.5
109,534 - +0.6
109,743 - PfGW456L13_94 0.53 -0.1
109,817 + PfGW456L13_94 0.77 +1.1
109,818 - PfGW456L13_94 0.77 +0.3
109,818 - PfGW456L13_94 0.77 +1.5
109,818 - PfGW456L13_94 0.77 +0.7
109,818 - PfGW456L13_94 0.77 -0.1
109,818 - PfGW456L13_94 0.77 +1.2
109,887 + +1.6
109,887 + +1.0
109,888 - -0.0
109,888 - +0.0
109,888 - -0.1
110,249 + PfGW456L13_95 0.35 -3.4
110,250 - PfGW456L13_95 0.35 +1.4
110,250 - PfGW456L13_95 0.35 -2.5
110,390 + PfGW456L13_95 0.49 +0.3
110,391 - PfGW456L13_95 0.49 +0.6
110,398 + PfGW456L13_95 0.50 +0.0
110,399 - PfGW456L13_95 0.50 -1.1
110,399 - PfGW456L13_95 0.50 -2.4
110,399 - PfGW456L13_95 0.50 -0.5
110,669 + PfGW456L13_95 0.78 +1.1
110,669 + PfGW456L13_95 0.78 +0.1
110,705 + PfGW456L13_95 0.82 +1.9
110,706 - PfGW456L13_95 0.82 +0.3
110,706 - PfGW456L13_95 0.82 +2.1
110,706 - PfGW456L13_95 0.82 -0.3
110,706 - PfGW456L13_95 0.82 +0.6
110,706 - PfGW456L13_95 0.82 -0.3
110,768 + PfGW456L13_95 0.89 -0.8
110,768 + PfGW456L13_95 0.89 +1.8
110,768 + PfGW456L13_95 0.89 +0.2
110,768 + PfGW456L13_95 0.89 +2.3
110,843 + +0.3
110,843 + +0.9
110,843 + -1.2
110,843 + -1.8
110,843 + -0.4
110,843 + -0.1
110,844 - +0.0
110,844 - +1.1
110,846 + +0.5
110,847 - -0.6
110,847 - +0.2
110,847 - +0.3

Or see this region's nucleotide sequence