Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4859 and PfGW456L13_4860 overlap by 8 nucleotides PfGW456L13_4860 and PfGW456L13_4861 are separated by 41 nucleotides PfGW456L13_4861 and PfGW456L13_4862 are separated by 38 nucleotides
PfGW456L13_4859 - Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB), at 5,425,854 to 5,427,005
_4859
PfGW456L13_4860 - Mlr7403 protein, at 5,426,998 to 5,427,639
_4860
PfGW456L13_4861 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 5,427,681 to 5,428,970
_4861
PfGW456L13_4862 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1), at 5,429,009 to 5,430,118
_4862
Position (kb) 5427
5428
5429 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5426.789 kb on - strand, within PfGW456L13_4859 at 5426.789 kb on - strand, within PfGW456L13_4859 at 5426.789 kb on - strand, within PfGW456L13_4859 at 5426.828 kb on - strand, within PfGW456L13_4859 at 5427.363 kb on - strand, within PfGW456L13_4860 at 5427.513 kb on - strand, within PfGW456L13_4860 at 5427.646 kb on - strand at 5427.660 kb on - strand at 5427.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,426,789 - PfGW456L13_4859 0.81 -2.3 5,426,789 - PfGW456L13_4859 0.81 -2.0 5,426,789 - PfGW456L13_4859 0.81 -1.4 5,426,828 - PfGW456L13_4859 0.85 -1.9 5,427,363 - PfGW456L13_4860 0.57 +1.6 5,427,513 - PfGW456L13_4860 0.80 -0.9 5,427,646 - -0.9 5,427,660 - +0.1 5,427,673 - -3.3
Or see this region's nucleotide sequence