Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4298

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4297 and PfGW456L13_4298 are separated by 162 nucleotidesPfGW456L13_4298 and PfGW456L13_4299 overlap by 11 nucleotides PfGW456L13_4297 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 4,813,857 to 4,814,750 _4297 PfGW456L13_4298 - D-glycerate 2-kinase (EC 2.7.1.-), at 4,814,913 to 4,816,193 _4298 PfGW456L13_4299 - Pyruvate kinase (EC 2.7.1.40), at 4,816,183 to 4,817,598 _4299 Position (kb) 4814 4815 4816 4817Strain fitness (log2 ratio) -3 -2 -1 0 1at 4814.077 kb on + strand, within PfGW456L13_4297at 4814.077 kb on + strand, within PfGW456L13_4297at 4814.077 kb on + strand, within PfGW456L13_4297at 4814.077 kb on + strand, within PfGW456L13_4297at 4814.077 kb on + strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.078 kb on - strand, within PfGW456L13_4297at 4814.202 kb on + strand, within PfGW456L13_4297at 4814.203 kb on - strand, within PfGW456L13_4297at 4814.748 kb on + strandat 4814.748 kb on + strandat 4814.749 kb on - strandat 4814.749 kb on - strandat 4814.749 kb on - strandat 4814.812 kb on + strandat 4814.813 kb on - strandat 4814.889 kb on + strandat 4814.889 kb on + strandat 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.449 kb on + strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.450 kb on - strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.453 kb on + strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.454 kb on - strand, within PfGW456L13_4298at 4815.507 kb on - strand, within PfGW456L13_4298at 4815.551 kb on - strand, within PfGW456L13_4298at 4815.948 kb on + strand, within PfGW456L13_4298at 4815.949 kb on - strand, within PfGW456L13_4298at 4815.949 kb on - strand, within PfGW456L13_4298at 4816.023 kb on + strand, within PfGW456L13_4298at 4816.024 kb on - strand, within PfGW456L13_4298at 4816.114 kb on + strandat 4816.115 kb on - strandat 4816.178 kb on + strandat 4816.179 kb on - strandat 4816.194 kb on + strandat 4816.598 kb on - strand, within PfGW456L13_4299at 4816.598 kb on - strand, within PfGW456L13_4299at 4816.664 kb on + strand, within PfGW456L13_4299at 4816.664 kb on + strand, within PfGW456L13_4299at 4817.132 kb on - strand, within PfGW456L13_4299

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
4,814,077 + PfGW456L13_4297 0.25 -1.2
4,814,077 + PfGW456L13_4297 0.25 -1.2
4,814,077 + PfGW456L13_4297 0.25 -0.1
4,814,077 + PfGW456L13_4297 0.25 -0.4
4,814,077 + PfGW456L13_4297 0.25 +0.6
4,814,078 - PfGW456L13_4297 0.25 +0.5
4,814,078 - PfGW456L13_4297 0.25 -0.0
4,814,078 - PfGW456L13_4297 0.25 +1.0
4,814,078 - PfGW456L13_4297 0.25 +0.3
4,814,078 - PfGW456L13_4297 0.25 -0.4
4,814,078 - PfGW456L13_4297 0.25 +0.6
4,814,078 - PfGW456L13_4297 0.25 +0.2
4,814,078 - PfGW456L13_4297 0.25 -0.5
4,814,078 - PfGW456L13_4297 0.25 -3.5
4,814,202 + PfGW456L13_4297 0.39 +0.2
4,814,203 - PfGW456L13_4297 0.39 +0.2
4,814,748 + +1.6
4,814,748 + -3.7
4,814,749 - -0.4
4,814,749 - +1.5
4,814,749 - -1.3
4,814,812 + +0.3
4,814,813 - +0.8
4,814,889 + -0.5
4,814,889 + +0.1
4,815,449 + PfGW456L13_4298 0.42 +1.0
4,815,449 + PfGW456L13_4298 0.42 +1.5
4,815,449 + PfGW456L13_4298 0.42 +0.6
4,815,449 + PfGW456L13_4298 0.42 -0.6
4,815,449 + PfGW456L13_4298 0.42 -1.9
4,815,449 + PfGW456L13_4298 0.42 +0.4
4,815,449 + PfGW456L13_4298 0.42 +0.5
4,815,449 + PfGW456L13_4298 0.42 +1.1
4,815,450 - PfGW456L13_4298 0.42 +1.0
4,815,450 - PfGW456L13_4298 0.42 -1.0
4,815,450 - PfGW456L13_4298 0.42 -0.2
4,815,450 - PfGW456L13_4298 0.42 -0.1
4,815,450 - PfGW456L13_4298 0.42 -0.1
4,815,450 - PfGW456L13_4298 0.42 +0.4
4,815,450 - PfGW456L13_4298 0.42 -0.8
4,815,450 - PfGW456L13_4298 0.42 -0.6
4,815,450 - PfGW456L13_4298 0.42 -1.3
4,815,450 - PfGW456L13_4298 0.42 -1.9
4,815,450 - PfGW456L13_4298 0.42 -1.3
4,815,450 - PfGW456L13_4298 0.42 -0.3
4,815,450 - PfGW456L13_4298 0.42 +0.3
4,815,450 - PfGW456L13_4298 0.42 -1.4
4,815,453 + PfGW456L13_4298 0.42 -1.8
4,815,453 + PfGW456L13_4298 0.42 -1.3
4,815,453 + PfGW456L13_4298 0.42 -0.3
4,815,453 + PfGW456L13_4298 0.42 -1.5
4,815,454 - PfGW456L13_4298 0.42 -0.6
4,815,454 - PfGW456L13_4298 0.42 -0.3
4,815,454 - PfGW456L13_4298 0.42 +0.5
4,815,454 - PfGW456L13_4298 0.42 -0.6
4,815,454 - PfGW456L13_4298 0.42 -0.0
4,815,454 - PfGW456L13_4298 0.42 +0.5
4,815,507 - PfGW456L13_4298 0.46 +1.5
4,815,551 - PfGW456L13_4298 0.50 +1.0
4,815,948 + PfGW456L13_4298 0.81 +1.4
4,815,949 - PfGW456L13_4298 0.81 -1.4
4,815,949 - PfGW456L13_4298 0.81 -0.1
4,816,023 + PfGW456L13_4298 0.87 +0.2
4,816,024 - PfGW456L13_4298 0.87 -2.7
4,816,114 + -0.9
4,816,115 - -0.1
4,816,178 + -2.0
4,816,179 - +0.3
4,816,194 + -0.4
4,816,598 - PfGW456L13_4299 0.29 -0.9
4,816,598 - PfGW456L13_4299 0.29 +0.4
4,816,664 + PfGW456L13_4299 0.34 -0.6
4,816,664 + PfGW456L13_4299 0.34 -2.8
4,817,132 - PfGW456L13_4299 0.67 +1.2

Or see this region's nucleotide sequence