Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4253

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4252 and PfGW456L13_4253 overlap by 1 nucleotidesPfGW456L13_4253 and PfGW456L13_4254 are separated by 8 nucleotidesPfGW456L13_4254 and PfGW456L13_4255 are separated by 201 nucleotides PfGW456L13_4252 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 4,765,815 to 4,766,954 _4252 PfGW456L13_4253 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 4,766,954 to 4,767,604 _4253 PfGW456L13_4254 - FIG00955360: hypothetical protein, at 4,767,613 to 4,768,326 _4254 PfGW456L13_4255 - FIG00964480: hypothetical protein, at 4,768,528 to 4,768,944 _4255 Position (kb) 4766 4767 4768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4766.959 kb on + strandat 4766.959 kb on + strandat 4766.959 kb on + strandat 4767.086 kb on + strand, within PfGW456L13_4253at 4767.115 kb on + strand, within PfGW456L13_4253at 4767.308 kb on + strand, within PfGW456L13_4253at 4767.318 kb on + strand, within PfGW456L13_4253at 4767.319 kb on - strand, within PfGW456L13_4253at 4767.426 kb on + strand, within PfGW456L13_4253at 4767.427 kb on - strand, within PfGW456L13_4253at 4767.432 kb on + strand, within PfGW456L13_4253at 4767.570 kb on + strandat 4767.602 kb on + strandat 4767.613 kb on - strandat 4767.698 kb on - strand, within PfGW456L13_4254at 4767.698 kb on - strand, within PfGW456L13_4254at 4767.753 kb on + strand, within PfGW456L13_4254at 4767.865 kb on + strand, within PfGW456L13_4254at 4767.865 kb on + strand, within PfGW456L13_4254at 4768.006 kb on + strand, within PfGW456L13_4254at 4768.006 kb on + strand, within PfGW456L13_4254at 4768.007 kb on - strand, within PfGW456L13_4254at 4768.057 kb on + strand, within PfGW456L13_4254at 4768.058 kb on - strand, within PfGW456L13_4254at 4768.086 kb on + strand, within PfGW456L13_4254at 4768.087 kb on - strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.090 kb on + strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.091 kb on - strand, within PfGW456L13_4254at 4768.225 kb on + strand, within PfGW456L13_4254at 4768.270 kb on + strandat 4768.270 kb on + strandat 4768.343 kb on + strandat 4768.344 kb on - strandat 4768.371 kb on + strandat 4768.394 kb on + strandat 4768.395 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.471 kb on - strandat 4768.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,766,959 + -2.6
4,766,959 + -0.6
4,766,959 + -0.2
4,767,086 + PfGW456L13_4253 0.20 -3.1
4,767,115 + PfGW456L13_4253 0.25 -3.0
4,767,308 + PfGW456L13_4253 0.54 -1.6
4,767,318 + PfGW456L13_4253 0.56 -0.8
4,767,319 - PfGW456L13_4253 0.56 -3.2
4,767,426 + PfGW456L13_4253 0.73 -2.7
4,767,427 - PfGW456L13_4253 0.73 -1.4
4,767,432 + PfGW456L13_4253 0.73 -2.9
4,767,570 + -0.9
4,767,602 + +0.2
4,767,613 - -2.5
4,767,698 - PfGW456L13_4254 0.12 -3.5
4,767,698 - PfGW456L13_4254 0.12 -4.0
4,767,753 + PfGW456L13_4254 0.20 -3.6
4,767,865 + PfGW456L13_4254 0.35 -4.2
4,767,865 + PfGW456L13_4254 0.35 -2.0
4,768,006 + PfGW456L13_4254 0.55 -1.2
4,768,006 + PfGW456L13_4254 0.55 -2.2
4,768,007 - PfGW456L13_4254 0.55 -3.3
4,768,057 + PfGW456L13_4254 0.62 +0.5
4,768,058 - PfGW456L13_4254 0.62 -2.6
4,768,086 + PfGW456L13_4254 0.66 -0.4
4,768,087 - PfGW456L13_4254 0.66 -1.9
4,768,090 + PfGW456L13_4254 0.67 +0.8
4,768,090 + PfGW456L13_4254 0.67 -2.6
4,768,090 + PfGW456L13_4254 0.67 -0.2
4,768,090 + PfGW456L13_4254 0.67 -1.5
4,768,090 + PfGW456L13_4254 0.67 -3.0
4,768,090 + PfGW456L13_4254 0.67 -1.7
4,768,090 + PfGW456L13_4254 0.67 -0.6
4,768,091 - PfGW456L13_4254 0.67 -1.0
4,768,091 - PfGW456L13_4254 0.67 -3.0
4,768,091 - PfGW456L13_4254 0.67 -0.8
4,768,091 - PfGW456L13_4254 0.67 -4.0
4,768,091 - PfGW456L13_4254 0.67 -3.4
4,768,091 - PfGW456L13_4254 0.67 -2.4
4,768,091 - PfGW456L13_4254 0.67 -2.6
4,768,091 - PfGW456L13_4254 0.67 -2.4
4,768,225 + PfGW456L13_4254 0.86 -3.2
4,768,270 + -0.7
4,768,270 + -1.8
4,768,343 + -0.7
4,768,344 - -3.1
4,768,371 + -0.2
4,768,394 + +1.7
4,768,395 - -0.6
4,768,471 - -1.7
4,768,471 - +0.5
4,768,471 - -0.5
4,768,471 - -1.0
4,768,536 + -3.1

Or see this region's nucleotide sequence