Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4077

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4075 and PfGW456L13_4076 are separated by 277 nucleotidesPfGW456L13_4076 and PfGW456L13_4077 are separated by 67 nucleotidesPfGW456L13_4077 and PfGW456L13_4078 are separated by 123 nucleotides PfGW456L13_4075 - Putative oxidoreductase YncB, at 4,573,473 to 4,574,504 _4075 PfGW456L13_4076 - FIG000557: hypothetical protein co-occurring with RecR, at 4,574,782 to 4,575,120 _4076 PfGW456L13_4077 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 4,575,188 to 4,577,269 _4077 PfGW456L13_4078 - FIG00953368: hypothetical protein, at 4,577,393 to 4,578,190 _4078 Position (kb) 4575 4576 4577 4578Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4574.347 kb on + strand, within PfGW456L13_4075at 4574.348 kb on - strand, within PfGW456L13_4075at 4574.423 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.541 kb on + strandat 4574.542 kb on - strandat 4574.542 kb on - strandat 4574.565 kb on - strandat 4574.580 kb on + strandat 4574.581 kb on - strandat 4574.581 kb on - strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.703 kb on + strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.704 kb on - strandat 4574.740 kb on - strandat 4574.756 kb on + strandat 4574.757 kb on - strandat 4575.124 kb on - strandat 4575.124 kb on - strandat 4575.138 kb on + strandat 4575.139 kb on - strandat 4575.139 kb on - strandat 4575.148 kb on - strandat 4575.186 kb on + strandat 4575.186 kb on + strandat 4575.187 kb on - strandat 4575.187 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.190 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.224 kb on - strandat 4575.227 kb on - strandat 4577.311 kb on - strandat 4577.349 kb on + strandat 4577.349 kb on + strandat 4577.349 kb on + strandat 4577.350 kb on - strandat 4577.350 kb on - strandat 4577.350 kb on - strandat 4577.350 kb on - strandat 4577.350 kb on - strandat 4577.350 kb on - strandat 4577.358 kb on + strandat 4577.358 kb on + strandat 4577.393 kb on - strandat 4577.534 kb on + strand, within PfGW456L13_4078at 4577.534 kb on + strand, within PfGW456L13_4078at 4577.534 kb on + strand, within PfGW456L13_4078at 4577.535 kb on - strand, within PfGW456L13_4078at 4577.535 kb on - strand, within PfGW456L13_4078at 4577.648 kb on + strand, within PfGW456L13_4078at 4577.648 kb on + strand, within PfGW456L13_4078at 4577.649 kb on - strand, within PfGW456L13_4078at 4577.649 kb on - strand, within PfGW456L13_4078at 4577.687 kb on + strand, within PfGW456L13_4078at 4577.688 kb on - strand, within PfGW456L13_4078at 4577.805 kb on - strand, within PfGW456L13_4078at 4577.811 kb on - strand, within PfGW456L13_4078at 4578.017 kb on + strand, within PfGW456L13_4078at 4578.017 kb on + strand, within PfGW456L13_4078at 4578.017 kb on + strand, within PfGW456L13_4078at 4578.018 kb on - strand, within PfGW456L13_4078at 4578.018 kb on - strand, within PfGW456L13_4078at 4578.018 kb on - strand, within PfGW456L13_4078at 4578.018 kb on - strand, within PfGW456L13_4078at 4578.018 kb on - strand, within PfGW456L13_4078at 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.113 kb on + strandat 4578.114 kb on - strandat 4578.114 kb on - strandat 4578.114 kb on - strandat 4578.114 kb on - strandat 4578.114 kb on - strandat 4578.116 kb on - strandat 4578.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,574,347 + PfGW456L13_4075 0.85 -0.4
4,574,348 - PfGW456L13_4075 0.85 +0.6
4,574,423 + +0.1
4,574,541 + -0.4
4,574,541 + +0.5
4,574,541 + +1.2
4,574,541 + -3.5
4,574,541 + -1.5
4,574,541 + +1.2
4,574,542 - +0.3
4,574,542 - +1.5
4,574,565 - -1.7
4,574,580 + +0.7
4,574,581 - -3.1
4,574,581 - -2.5
4,574,703 + +1.1
4,574,703 + +0.3
4,574,703 + +2.6
4,574,703 + +2.4
4,574,703 + +0.2
4,574,703 + -0.7
4,574,703 + -0.3
4,574,703 + +0.9
4,574,703 + -0.1
4,574,703 + -0.1
4,574,703 + +0.1
4,574,704 - +0.6
4,574,704 - -0.0
4,574,704 - +0.2
4,574,704 - +0.4
4,574,704 - +0.2
4,574,704 - -0.8
4,574,704 - +0.1
4,574,740 - +1.5
4,574,756 + -0.0
4,574,757 - -0.1
4,575,124 - +2.2
4,575,124 - -0.9
4,575,138 + +2.2
4,575,139 - -2.8
4,575,139 - -1.7
4,575,148 - +1.4
4,575,186 + +0.4
4,575,186 + -2.3
4,575,187 - +0.4
4,575,187 - +1.0
4,575,190 - -0.2
4,575,190 - -0.3
4,575,190 - +1.1
4,575,190 - +0.1
4,575,190 - +0.3
4,575,190 - +0.8
4,575,224 - -2.5
4,575,224 - -0.3
4,575,224 - -2.0
4,575,224 - +0.6
4,575,224 - -2.2
4,575,227 - -0.7
4,577,311 - -1.0
4,577,349 + +2.7
4,577,349 + -2.8
4,577,349 + +0.9
4,577,350 - +0.3
4,577,350 - +0.8
4,577,350 - -2.5
4,577,350 - +0.8
4,577,350 - +0.2
4,577,350 - -0.2
4,577,358 + -0.5
4,577,358 + -3.0
4,577,393 - +0.8
4,577,534 + PfGW456L13_4078 0.18 +0.5
4,577,534 + PfGW456L13_4078 0.18 -0.3
4,577,534 + PfGW456L13_4078 0.18 +0.8
4,577,535 - PfGW456L13_4078 0.18 +0.2
4,577,535 - PfGW456L13_4078 0.18 -2.9
4,577,648 + PfGW456L13_4078 0.32 -1.3
4,577,648 + PfGW456L13_4078 0.32 -0.4
4,577,649 - PfGW456L13_4078 0.32 +1.5
4,577,649 - PfGW456L13_4078 0.32 -0.0
4,577,687 + PfGW456L13_4078 0.37 -0.7
4,577,688 - PfGW456L13_4078 0.37 -3.3
4,577,805 - PfGW456L13_4078 0.52 -4.4
4,577,811 - PfGW456L13_4078 0.52 +0.2
4,578,017 + PfGW456L13_4078 0.78 -1.5
4,578,017 + PfGW456L13_4078 0.78 -0.5
4,578,017 + PfGW456L13_4078 0.78 +0.6
4,578,018 - PfGW456L13_4078 0.78 -0.3
4,578,018 - PfGW456L13_4078 0.78 +1.1
4,578,018 - PfGW456L13_4078 0.78 +1.2
4,578,018 - PfGW456L13_4078 0.78 -0.0
4,578,018 - PfGW456L13_4078 0.78 -0.5
4,578,113 + -0.8
4,578,113 + -0.1
4,578,113 + -0.1
4,578,113 + -1.4
4,578,113 + -0.8
4,578,113 + -2.3
4,578,113 + +1.1
4,578,113 + -2.3
4,578,113 + +0.3
4,578,114 - +0.2
4,578,114 - -0.5
4,578,114 - +0.4
4,578,114 - +1.1
4,578,114 - +0.4
4,578,116 - -2.8
4,578,143 - -2.6

Or see this region's nucleotide sequence