Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_156

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_155 and PfGW456L13_156 overlap by 1 nucleotidesPfGW456L13_156 and PfGW456L13_157 overlap by 4 nucleotides PfGW456L13_155 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 178,963 to 179,934 _155 PfGW456L13_156 - DNA mismatch repair protein MutL, at 179,934 to 181,844 _156 PfGW456L13_157 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 181,841 to 183,256 _157 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.992 kb on - strandat 179.148 kb on - strand, within PfGW456L13_155at 179.148 kb on - strand, within PfGW456L13_155at 179.170 kb on + strand, within PfGW456L13_155at 179.171 kb on - strand, within PfGW456L13_155at 179.171 kb on - strand, within PfGW456L13_155at 179.179 kb on + strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.180 kb on - strand, within PfGW456L13_155at 179.212 kb on - strand, within PfGW456L13_155at 179.275 kb on - strand, within PfGW456L13_155at 179.291 kb on - strand, within PfGW456L13_155at 179.615 kb on + strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.616 kb on - strand, within PfGW456L13_155at 179.715 kb on - strand, within PfGW456L13_155at 179.715 kb on - strand, within PfGW456L13_155at 179.866 kb on + strandat 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.406 kb on + strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.407 kb on - strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.475 kb on + strand, within PfGW456L13_156at 180.476 kb on - strand, within PfGW456L13_156at 180.476 kb on - strand, within PfGW456L13_156at 180.583 kb on + strand, within PfGW456L13_156at 180.635 kb on - strand, within PfGW456L13_156at 180.635 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.641 kb on - strand, within PfGW456L13_156at 180.647 kb on - strand, within PfGW456L13_156at 180.857 kb on - strand, within PfGW456L13_156at 181.061 kb on - strand, within PfGW456L13_156at 181.113 kb on + strand, within PfGW456L13_156at 181.114 kb on - strand, within PfGW456L13_156at 181.114 kb on - strand, within PfGW456L13_156at 181.114 kb on - strand, within PfGW456L13_156at 181.114 kb on - strand, within PfGW456L13_156at 182.046 kb on + strand, within PfGW456L13_157at 182.047 kb on - strand, within PfGW456L13_157at 182.047 kb on - strand, within PfGW456L13_157at 182.047 kb on - strand, within PfGW456L13_157

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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178,992 - -0.7
179,148 - PfGW456L13_155 0.19 -1.7
179,148 - PfGW456L13_155 0.19 -0.4
179,170 + PfGW456L13_155 0.21 -1.3
179,171 - PfGW456L13_155 0.21 -1.6
179,171 - PfGW456L13_155 0.21 -1.7
179,179 + PfGW456L13_155 0.22 -1.8
179,180 - PfGW456L13_155 0.22 -2.7
179,180 - PfGW456L13_155 0.22 -2.1
179,180 - PfGW456L13_155 0.22 -1.1
179,180 - PfGW456L13_155 0.22 -3.2
179,212 - PfGW456L13_155 0.26 -2.1
179,275 - PfGW456L13_155 0.32 -2.1
179,291 - PfGW456L13_155 0.34 -1.4
179,615 + PfGW456L13_155 0.67 -2.8
179,616 - PfGW456L13_155 0.67 -2.9
179,616 - PfGW456L13_155 0.67 -3.3
179,616 - PfGW456L13_155 0.67 -2.1
179,616 - PfGW456L13_155 0.67 +0.6
179,616 - PfGW456L13_155 0.67 -1.0
179,715 - PfGW456L13_155 0.77 -1.2
179,715 - PfGW456L13_155 0.77 +0.3
179,866 + +0.0
180,406 + PfGW456L13_156 0.25 -1.5
180,406 + PfGW456L13_156 0.25 -1.8
180,406 + PfGW456L13_156 0.25 -0.1
180,406 + PfGW456L13_156 0.25 -2.6
180,406 + PfGW456L13_156 0.25 -2.3
180,406 + PfGW456L13_156 0.25 +0.3
180,407 - PfGW456L13_156 0.25 +0.3
180,407 - PfGW456L13_156 0.25 +1.0
180,407 - PfGW456L13_156 0.25 +1.1
180,407 - PfGW456L13_156 0.25 -0.5
180,407 - PfGW456L13_156 0.25 -0.3
180,407 - PfGW456L13_156 0.25 -1.5
180,407 - PfGW456L13_156 0.25 -1.4
180,407 - PfGW456L13_156 0.25 -0.2
180,407 - PfGW456L13_156 0.25 -0.8
180,407 - PfGW456L13_156 0.25 -1.8
180,407 - PfGW456L13_156 0.25 -2.0
180,475 + PfGW456L13_156 0.28 -2.4
180,475 + PfGW456L13_156 0.28 -2.4
180,475 + PfGW456L13_156 0.28 -2.0
180,476 - PfGW456L13_156 0.28 -1.5
180,476 - PfGW456L13_156 0.28 -1.8
180,583 + PfGW456L13_156 0.34 +1.0
180,635 - PfGW456L13_156 0.37 -1.4
180,635 - PfGW456L13_156 0.37 +2.0
180,641 - PfGW456L13_156 0.37 +0.5
180,641 - PfGW456L13_156 0.37 -2.4
180,641 - PfGW456L13_156 0.37 -0.8
180,647 - PfGW456L13_156 0.37 -0.7
180,857 - PfGW456L13_156 0.48 +0.5
181,061 - PfGW456L13_156 0.59 -3.5
181,113 + PfGW456L13_156 0.62 -1.7
181,114 - PfGW456L13_156 0.62 -2.7
181,114 - PfGW456L13_156 0.62 -0.3
181,114 - PfGW456L13_156 0.62 -3.0
181,114 - PfGW456L13_156 0.62 +0.6
182,046 + PfGW456L13_157 0.14 +1.3
182,047 - PfGW456L13_157 0.15 -1.4
182,047 - PfGW456L13_157 0.15 +1.0
182,047 - PfGW456L13_157 0.15 -3.7

Or see this region's nucleotide sequence