Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_152

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_151 and PfGW456L13_152 overlap by 1 nucleotidesPfGW456L13_152 and PfGW456L13_153 are separated by 96 nucleotides PfGW456L13_151 - HflC protein, at 175,154 to 176,023 _151 PfGW456L13_152 - HflK protein, at 176,023 to 177,198 _152 PfGW456L13_153 - GTP-binding protein HflX, at 177,295 to 178,596 _153 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.078 kb on - strandat 175.116 kb on + strandat 175.116 kb on + strandat 175.177 kb on - strandat 175.177 kb on - strandat 175.260 kb on + strand, within PfGW456L13_151at 175.261 kb on - strand, within PfGW456L13_151at 175.269 kb on + strand, within PfGW456L13_151at 175.269 kb on + strand, within PfGW456L13_151at 175.270 kb on - strand, within PfGW456L13_151at 175.302 kb on + strand, within PfGW456L13_151at 175.582 kb on + strand, within PfGW456L13_151at 175.723 kb on - strand, within PfGW456L13_151at 175.723 kb on - strand, within PfGW456L13_151at 175.723 kb on - strand, within PfGW456L13_151at 175.725 kb on + strand, within PfGW456L13_151at 175.953 kb on + strandat 175.954 kb on - strandat 175.954 kb on - strandat 175.954 kb on - strandat 176.015 kb on - strandat 176.040 kb on + strandat 176.041 kb on - strandat 176.418 kb on - strand, within PfGW456L13_152at 176.418 kb on - strand, within PfGW456L13_152at 176.515 kb on + strand, within PfGW456L13_152at 176.736 kb on - strand, within PfGW456L13_152at 176.736 kb on - strand, within PfGW456L13_152at 176.736 kb on - strand, within PfGW456L13_152at 176.832 kb on - strand, within PfGW456L13_152at 176.832 kb on - strand, within PfGW456L13_152at 176.832 kb on - strand, within PfGW456L13_152at 176.832 kb on - strand, within PfGW456L13_152at 176.832 kb on - strand, within PfGW456L13_152at 176.856 kb on - strand, within PfGW456L13_152at 176.856 kb on - strand, within PfGW456L13_152at 176.856 kb on - strand, within PfGW456L13_152at 176.856 kb on - strand, within PfGW456L13_152at 176.886 kb on - strand, within PfGW456L13_152at 176.886 kb on - strand, within PfGW456L13_152at 176.889 kb on - strand, within PfGW456L13_152at 176.889 kb on - strand, within PfGW456L13_152at 176.937 kb on - strand, within PfGW456L13_152at 177.253 kb on - strandat 177.297 kb on - strandat 177.646 kb on - strand, within PfGW456L13_153at 177.646 kb on - strand, within PfGW456L13_153at 177.647 kb on + strand, within PfGW456L13_153at 177.648 kb on - strand, within PfGW456L13_153at 177.648 kb on - strand, within PfGW456L13_153at 177.648 kb on - strand, within PfGW456L13_153at 177.648 kb on - strand, within PfGW456L13_153at 177.648 kb on - strand, within PfGW456L13_153at 177.787 kb on - strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.978 kb on + strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 177.979 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153at 178.195 kb on - strand, within PfGW456L13_153

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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175,078 - -3.8
175,078 - +1.5
175,078 - -1.7
175,078 - +0.5
175,078 - -3.2
175,078 - -1.0
175,078 - +0.3
175,078 - -1.0
175,078 - +1.1
175,116 + -3.0
175,116 + -0.2
175,177 - -0.8
175,177 - -0.4
175,260 + PfGW456L13_151 0.12 +0.4
175,261 - PfGW456L13_151 0.12 -1.0
175,269 + PfGW456L13_151 0.13 -0.5
175,269 + PfGW456L13_151 0.13 -1.8
175,270 - PfGW456L13_151 0.13 -2.4
175,302 + PfGW456L13_151 0.17 -2.5
175,582 + PfGW456L13_151 0.49 -1.0
175,723 - PfGW456L13_151 0.65 +0.3
175,723 - PfGW456L13_151 0.65 -2.4
175,723 - PfGW456L13_151 0.65 -1.0
175,725 + PfGW456L13_151 0.66 -1.5
175,953 + -1.8
175,954 - -1.4
175,954 - -2.5
175,954 - -0.8
176,015 - -1.8
176,040 + -1.3
176,041 - +0.1
176,418 - PfGW456L13_152 0.34 -1.7
176,418 - PfGW456L13_152 0.34 -0.9
176,515 + PfGW456L13_152 0.42 -2.1
176,736 - PfGW456L13_152 0.61 -1.5
176,736 - PfGW456L13_152 0.61 -2.5
176,736 - PfGW456L13_152 0.61 +0.6
176,832 - PfGW456L13_152 0.69 -1.8
176,832 - PfGW456L13_152 0.69 -1.1
176,832 - PfGW456L13_152 0.69 -0.1
176,832 - PfGW456L13_152 0.69 -1.1
176,832 - PfGW456L13_152 0.69 -2.8
176,856 - PfGW456L13_152 0.71 +2.3
176,856 - PfGW456L13_152 0.71 -3.1
176,856 - PfGW456L13_152 0.71 -3.0
176,856 - PfGW456L13_152 0.71 -2.7
176,886 - PfGW456L13_152 0.73 -2.5
176,886 - PfGW456L13_152 0.73 -0.7
176,889 - PfGW456L13_152 0.74 -2.8
176,889 - PfGW456L13_152 0.74 -2.1
176,937 - PfGW456L13_152 0.78 -0.5
177,253 - +0.6
177,297 - +1.4
177,646 - PfGW456L13_153 0.27 +0.5
177,646 - PfGW456L13_153 0.27 +0.4
177,647 + PfGW456L13_153 0.27 -0.1
177,648 - PfGW456L13_153 0.27 -0.2
177,648 - PfGW456L13_153 0.27 +0.9
177,648 - PfGW456L13_153 0.27 +1.0
177,648 - PfGW456L13_153 0.27 -0.5
177,648 - PfGW456L13_153 0.27 -0.0
177,787 - PfGW456L13_153 0.38 +1.3
177,978 + PfGW456L13_153 0.52 -3.8
177,978 + PfGW456L13_153 0.52 +0.4
177,978 + PfGW456L13_153 0.52 -0.8
177,978 + PfGW456L13_153 0.52 -1.7
177,979 - PfGW456L13_153 0.53 -1.2
177,979 - PfGW456L13_153 0.53 +0.5
177,979 - PfGW456L13_153 0.53 +0.5
177,979 - PfGW456L13_153 0.53 +1.0
178,195 - PfGW456L13_153 0.69 +1.5
178,195 - PfGW456L13_153 0.69 +0.4
178,195 - PfGW456L13_153 0.69 +2.1

Or see this region's nucleotide sequence