Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1477

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1476 and PfGW456L13_1477 are separated by 13 nucleotidesPfGW456L13_1477 and PfGW456L13_1478 are separated by 37 nucleotidesPfGW456L13_1478 and PfGW456L13_1479 overlap by 8 nucleotides PfGW456L13_1476 - Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2), at 1,628,753 to 1,629,559 _1476 PfGW456L13_1477 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 1,629,573 to 1,632,404 _1477 PfGW456L13_1478 - Lipoprotein signal peptidase (EC 3.4.23.36), at 1,632,442 to 1,632,909 _1478 PfGW456L13_1479 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 1,632,902 to 1,633,354 _1479 Position (kb) 1629 1630 1631 1632 1633Strain fitness (log2 ratio) -3 -2 -1 0 1at 1628.587 kb on + strandat 1628.587 kb on + strandat 1628.589 kb on + strandat 1628.589 kb on + strandat 1628.589 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.602 kb on + strandat 1628.620 kb on + strandat 1629.544 kb on + strandat 1632.867 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1632.915 kb on + strandat 1633.231 kb on + strand, within PfGW456L13_1479at 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.326 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strandat 1633.352 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,628,587 + +1.4
1,628,587 + -2.8
1,628,589 + +0.9
1,628,589 + -2.7
1,628,589 + -0.9
1,628,602 + -0.0
1,628,602 + +0.8
1,628,602 + +0.7
1,628,602 + +1.1
1,628,620 + -2.0
1,629,544 + +0.3
1,632,867 + -0.8
1,632,915 + -1.3
1,632,915 + -1.5
1,632,915 + +0.9
1,633,231 + PfGW456L13_1479 0.73 -2.5
1,633,326 + -1.6
1,633,326 + +0.8
1,633,326 + +1.1
1,633,326 + -2.3
1,633,352 + -1.2
1,633,352 + -0.2
1,633,352 + +1.4

Or see this region's nucleotide sequence