Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4475 and Echvi_4476 are separated by 513 nucleotides Echvi_4476 and Echvi_4477 are separated by 102 nucleotides Echvi_4477 and Echvi_4478 are separated by 48 nucleotides
Echvi_4475: Echvi_4475 - Divergent AAA domain., at 5,351,143 to 5,351,532
_4475
Echvi_4476: Echvi_4476 - Nitrogen regulatory protein PII, at 5,352,046 to 5,352,387
_4476
Echvi_4477: Echvi_4477 - RND family efflux transporter, MFP subunit, at 5,352,490 to 5,353,713
_4477
Echvi_4478: Echvi_4478 - heavy metal efflux pump (cobalt-zinc-cadmium), at 5,353,762 to 5,358,174
_4478
Position (kb) 5352
5353
5354 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5351.497 kb on - strand at 5351.596 kb on - strand at 5351.596 kb on - strand at 5351.651 kb on + strand at 5351.651 kb on + strand at 5351.651 kb on + strand at 5351.651 kb on + strand at 5351.651 kb on + strand at 5351.651 kb on + strand at 5351.652 kb on - strand at 5351.652 kb on - strand at 5351.659 kb on - strand at 5351.659 kb on - strand at 5351.664 kb on + strand at 5351.717 kb on + strand at 5351.718 kb on - strand at 5351.718 kb on - strand at 5351.787 kb on - strand at 5351.787 kb on - strand at 5351.790 kb on + strand at 5351.791 kb on - strand at 5351.809 kb on + strand at 5351.809 kb on + strand at 5351.809 kb on + strand at 5351.810 kb on - strand at 5351.819 kb on + strand at 5351.820 kb on - strand at 5351.867 kb on - strand at 5351.874 kb on - strand at 5351.874 kb on - strand at 5351.874 kb on - strand at 5351.971 kb on + strand at 5351.973 kb on + strand at 5351.973 kb on + strand at 5351.973 kb on + strand at 5351.974 kb on - strand at 5351.974 kb on - strand at 5351.975 kb on + strand at 5351.975 kb on + strand at 5351.975 kb on + strand at 5351.975 kb on + strand at 5351.975 kb on + strand at 5351.975 kb on + strand at 5352.032 kb on - strand at 5352.043 kb on + strand at 5352.044 kb on - strand at 5352.048 kb on - strand at 5352.055 kb on - strand at 5352.085 kb on + strand, within Echvi_4476 at 5352.086 kb on - strand, within Echvi_4476 at 5352.093 kb on - strand, within Echvi_4476 at 5352.116 kb on + strand, within Echvi_4476 at 5352.117 kb on - strand, within Echvi_4476 at 5352.117 kb on - strand, within Echvi_4476 at 5352.214 kb on + strand, within Echvi_4476 at 5352.214 kb on + strand, within Echvi_4476 at 5352.215 kb on - strand, within Echvi_4476 at 5352.231 kb on + strand, within Echvi_4476 at 5352.232 kb on - strand, within Echvi_4476 at 5352.270 kb on + strand, within Echvi_4476 at 5352.303 kb on + strand, within Echvi_4476 at 5352.303 kb on + strand, within Echvi_4476 at 5352.304 kb on - strand, within Echvi_4476 at 5352.413 kb on + strand at 5352.537 kb on - strand at 5352.539 kb on + strand at 5352.539 kb on + strand at 5352.539 kb on + strand at 5352.539 kb on + strand at 5352.540 kb on - strand at 5352.618 kb on + strand, within Echvi_4477 at 5352.687 kb on + strand, within Echvi_4477 at 5352.734 kb on - strand, within Echvi_4477 at 5352.743 kb on - strand, within Echvi_4477 at 5352.763 kb on + strand, within Echvi_4477 at 5352.763 kb on + strand, within Echvi_4477 at 5352.763 kb on + strand, within Echvi_4477 at 5352.780 kb on - strand, within Echvi_4477 at 5352.780 kb on - strand, within Echvi_4477 at 5352.826 kb on + strand, within Echvi_4477 at 5352.826 kb on + strand, within Echvi_4477 at 5352.826 kb on + strand, within Echvi_4477 at 5352.826 kb on + strand, within Echvi_4477 at 5352.827 kb on - strand, within Echvi_4477 at 5352.827 kb on - strand at 5352.970 kb on + strand, within Echvi_4477 at 5352.991 kb on + strand, within Echvi_4477 at 5352.992 kb on - strand, within Echvi_4477 at 5352.992 kb on - strand, within Echvi_4477 at 5352.992 kb on - strand, within Echvi_4477 at 5352.992 kb on - strand, within Echvi_4477 at 5353.031 kb on + strand, within Echvi_4477 at 5353.032 kb on - strand, within Echvi_4477 at 5353.032 kb on - strand, within Echvi_4477 at 5353.095 kb on - strand, within Echvi_4477 at 5353.100 kb on + strand, within Echvi_4477 at 5353.100 kb on + strand, within Echvi_4477 at 5353.100 kb on + strand, within Echvi_4477 at 5353.101 kb on - strand, within Echvi_4477 at 5353.148 kb on - strand, within Echvi_4477 at 5353.160 kb on + strand, within Echvi_4477 at 5353.190 kb on + strand, within Echvi_4477 at 5353.191 kb on - strand, within Echvi_4477 at 5353.229 kb on - strand, within Echvi_4477 at 5353.229 kb on - strand, within Echvi_4477 at 5353.241 kb on + strand, within Echvi_4477 at 5353.277 kb on + strand, within Echvi_4477 at 5353.290 kb on + strand, within Echvi_4477 at 5353.292 kb on + strand, within Echvi_4477 at 5353.293 kb on - strand, within Echvi_4477 at 5353.300 kb on + strand, within Echvi_4477 at 5353.300 kb on + strand at 5353.305 kb on - strand, within Echvi_4477 at 5353.309 kb on - strand, within Echvi_4477 at 5353.343 kb on + strand, within Echvi_4477 at 5353.382 kb on - strand, within Echvi_4477 at 5353.400 kb on - strand, within Echvi_4477 at 5353.453 kb on + strand, within Echvi_4477 at 5353.471 kb on + strand, within Echvi_4477 at 5353.572 kb on + strand, within Echvi_4477 at 5353.573 kb on - strand, within Echvi_4477 at 5353.602 kb on + strand at 5353.673 kb on - strand at 5353.688 kb on - strand at 5353.691 kb on - strand at 5353.693 kb on - strand at 5353.693 kb on - strand at 5353.693 kb on - strand at 5353.693 kb on - strand at 5353.693 kb on - strand at 5353.695 kb on - strand at 5353.697 kb on - strand at 5353.721 kb on - strand at 5353.785 kb on - strand at 5353.796 kb on + strand at 5353.811 kb on + strand at 5353.811 kb on + strand at 5353.811 kb on + strand at 5353.811 kb on + strand at 5353.844 kb on - strand at 5353.844 kb on - strand at 5353.883 kb on + strand at 5353.915 kb on - strand at 5353.964 kb on + strand at 5353.964 kb on + strand at 5353.965 kb on - strand at 5354.004 kb on + strand at 5354.059 kb on + strand at 5354.059 kb on + strand at 5354.060 kb on - strand at 5354.061 kb on + strand at 5354.062 kb on - strand at 5354.113 kb on + strand at 5354.113 kb on + strand at 5354.145 kb on - strand at 5354.239 kb on + strand, within Echvi_4478 at 5354.266 kb on - strand, within Echvi_4478 at 5354.269 kb on + strand, within Echvi_4478 at 5354.284 kb on - strand, within Echvi_4478 at 5354.300 kb on + strand, within Echvi_4478 at 5354.300 kb on + strand, within Echvi_4478 at 5354.301 kb on - strand, within Echvi_4478 at 5354.425 kb on + strand, within Echvi_4478 at 5354.431 kb on + strand, within Echvi_4478 at 5354.462 kb on + strand, within Echvi_4478 at 5354.517 kb on + strand, within Echvi_4478 at 5354.518 kb on - strand, within Echvi_4478 at 5354.518 kb on - strand, within Echvi_4478 at 5354.548 kb on + strand, within Echvi_4478 at 5354.549 kb on - strand, within Echvi_4478 at 5354.549 kb on - strand, within Echvi_4478 at 5354.573 kb on + strand, within Echvi_4478 at 5354.574 kb on - strand, within Echvi_4478 at 5354.574 kb on - strand, within Echvi_4478
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 5,351,497 - -1.3 5,351,596 - -2.1 5,351,596 - -1.1 5,351,651 + +0.2 5,351,651 + +0.6 5,351,651 + -1.2 5,351,651 + -0.6 5,351,651 + -0.2 5,351,651 + -0.4 5,351,652 - -2.1 5,351,652 - -1.6 5,351,659 - +0.8 5,351,659 - -2.4 5,351,664 + +0.8 5,351,717 + +0.5 5,351,718 - -1.6 5,351,718 - -0.9 5,351,787 - -2.7 5,351,787 - -1.7 5,351,790 + +2.1 5,351,791 - -0.2 5,351,809 + -0.7 5,351,809 + -1.4 5,351,809 + -0.7 5,351,810 - +0.2 5,351,819 + +0.6 5,351,820 - -1.6 5,351,867 - -3.3 5,351,874 - -0.2 5,351,874 - -1.0 5,351,874 - -3.1 5,351,971 + +0.2 5,351,973 + -0.4 5,351,973 + +0.5 5,351,973 + -0.2 5,351,974 - -3.4 5,351,974 - -0.8 5,351,975 + +0.1 5,351,975 + -0.1 5,351,975 + -0.0 5,351,975 + -1.3 5,351,975 + -0.6 5,351,975 + -0.1 5,352,032 - -1.0 5,352,043 + -0.1 5,352,044 - -1.4 5,352,048 - -1.6 5,352,055 - -2.4 5,352,085 + Echvi_4476 0.11 -0.0 5,352,086 - Echvi_4476 0.12 -3.0 5,352,093 - Echvi_4476 0.14 -3.5 5,352,116 + Echvi_4476 0.20 -1.0 5,352,117 - Echvi_4476 0.21 -2.5 5,352,117 - Echvi_4476 0.21 -2.8 5,352,214 + Echvi_4476 0.49 -0.5 5,352,214 + Echvi_4476 0.49 +1.3 5,352,215 - Echvi_4476 0.49 -1.0 5,352,231 + Echvi_4476 0.54 -0.7 5,352,232 - Echvi_4476 0.54 -0.0 5,352,270 + Echvi_4476 0.65 +0.1 5,352,303 + Echvi_4476 0.75 -0.2 5,352,303 + Echvi_4476 0.75 -0.4 5,352,304 - Echvi_4476 0.75 -3.6 5,352,413 + -0.6 5,352,537 - -0.8 5,352,539 + -0.0 5,352,539 + -0.5 5,352,539 + -0.5 5,352,539 + -0.7 5,352,540 - -1.7 5,352,618 + Echvi_4477 0.10 -0.8 5,352,687 + Echvi_4477 0.16 +1.8 5,352,734 - Echvi_4477 0.20 -4.0 5,352,743 - Echvi_4477 0.21 -2.0 5,352,763 + Echvi_4477 0.22 +0.0 5,352,763 + Echvi_4477 0.22 -1.2 5,352,763 + Echvi_4477 0.22 -0.1 5,352,780 - Echvi_4477 0.24 -2.1 5,352,780 - Echvi_4477 0.24 -0.6 5,352,826 + Echvi_4477 0.27 -0.2 5,352,826 + Echvi_4477 0.27 +0.7 5,352,826 + Echvi_4477 0.27 +1.1 5,352,826 + Echvi_4477 0.27 +0.4 5,352,827 - Echvi_4477 0.28 -1.7 5,352,827 - +0.8 5,352,970 + Echvi_4477 0.39 +1.2 5,352,991 + Echvi_4477 0.41 +0.3 5,352,992 - Echvi_4477 0.41 -1.8 5,352,992 - Echvi_4477 0.41 -1.2 5,352,992 - Echvi_4477 0.41 -2.0 5,352,992 - Echvi_4477 0.41 -1.6 5,353,031 + Echvi_4477 0.44 -1.1 5,353,032 - Echvi_4477 0.44 -0.3 5,353,032 - Echvi_4477 0.44 -3.7 5,353,095 - Echvi_4477 0.49 -1.7 5,353,100 + Echvi_4477 0.50 +0.1 5,353,100 + Echvi_4477 0.50 -0.5 5,353,100 + Echvi_4477 0.50 +1.0 5,353,101 - Echvi_4477 0.50 -1.9 5,353,148 - Echvi_4477 0.54 -0.9 5,353,160 + Echvi_4477 0.55 +1.1 5,353,190 + Echvi_4477 0.57 +0.1 5,353,191 - Echvi_4477 0.57 -0.8 5,353,229 - Echvi_4477 0.60 -2.4 5,353,229 - Echvi_4477 0.60 -3.2 5,353,241 + Echvi_4477 0.61 -0.7 5,353,277 + Echvi_4477 0.64 +0.4 5,353,290 + Echvi_4477 0.65 -1.0 5,353,292 + Echvi_4477 0.66 -1.0 5,353,293 - Echvi_4477 0.66 -2.9 5,353,300 + Echvi_4477 0.66 +0.8 5,353,300 + +1.8 5,353,305 - Echvi_4477 0.67 -2.0 5,353,309 - Echvi_4477 0.67 -1.0 5,353,343 + Echvi_4477 0.70 +0.2 5,353,382 - Echvi_4477 0.73 -3.0 5,353,400 - Echvi_4477 0.74 -4.2 5,353,453 + Echvi_4477 0.79 -0.6 5,353,471 + Echvi_4477 0.80 +0.2 5,353,572 + Echvi_4477 0.88 -0.1 5,353,573 - Echvi_4477 0.88 -2.8 5,353,602 + -1.8 5,353,673 - -2.6 5,353,688 - -1.0 5,353,691 - -1.8 5,353,693 - -0.2 5,353,693 - -1.1 5,353,693 - -2.0 5,353,693 - -0.2 5,353,693 - -2.6 5,353,695 - -0.6 5,353,697 - -2.6 5,353,721 - -2.6 5,353,785 - -1.6 5,353,796 + -0.6 5,353,811 + -0.4 5,353,811 + -0.2 5,353,811 + -0.2 5,353,811 + -0.3 5,353,844 - -2.9 5,353,844 - -1.7 5,353,883 + +1.0 5,353,915 - -2.2 5,353,964 + -0.2 5,353,964 + -0.3 5,353,965 - -2.1 5,354,004 + -1.0 5,354,059 + -0.2 5,354,059 + -0.2 5,354,060 - -2.2 5,354,061 + -0.8 5,354,062 - -2.9 5,354,113 + -0.1 5,354,113 + +0.8 5,354,145 - -2.6 5,354,239 + Echvi_4478 0.11 -0.6 5,354,266 - Echvi_4478 0.11 -1.4 5,354,269 + Echvi_4478 0.11 +0.3 5,354,284 - Echvi_4478 0.12 -2.8 5,354,300 + Echvi_4478 0.12 +0.4 5,354,300 + Echvi_4478 0.12 -2.1 5,354,301 - Echvi_4478 0.12 -2.3 5,354,425 + Echvi_4478 0.15 -0.2 5,354,431 + Echvi_4478 0.15 +0.4 5,354,462 + Echvi_4478 0.16 -0.7 5,354,517 + Echvi_4478 0.17 -0.2 5,354,518 - Echvi_4478 0.17 -1.0 5,354,518 - Echvi_4478 0.17 -1.1 5,354,548 + Echvi_4478 0.18 -1.0 5,354,549 - Echvi_4478 0.18 -0.0 5,354,549 - Echvi_4478 0.18 -0.7 5,354,573 + Echvi_4478 0.18 +1.8 5,354,574 - Echvi_4478 0.18 +0.8 5,354,574 - Echvi_4478 0.18 -0.5
Or see this region's nucleotide sequence