Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3743

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3742 and Echvi_3743 are separated by 110 nucleotidesEchvi_3743 and Echvi_3744 are separated by 663 nucleotides Echvi_3742: Echvi_3742 - Outer membrane protein, at 4,457,247 to 4,458,581 _3742 Echvi_3743: Echvi_3743 - Transcriptional regulator, at 4,458,692 to 4,459,264 _3743 Echvi_3744: Echvi_3744 - hypothetical protein, at 4,459,928 to 4,460,182 _3744 Position (kb) 4458 4459 4460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4457.696 kb on - strand, within Echvi_3742at 4457.702 kb on - strand, within Echvi_3742at 4457.718 kb on - strand, within Echvi_3742at 4457.725 kb on + strand, within Echvi_3742at 4457.725 kb on + strand, within Echvi_3742at 4457.726 kb on - strand, within Echvi_3742at 4457.726 kb on - strand, within Echvi_3742at 4457.726 kb on - strand, within Echvi_3742at 4457.825 kb on + strand, within Echvi_3742at 4457.856 kb on + strand, within Echvi_3742at 4457.856 kb on + strand, within Echvi_3742at 4457.856 kb on + strand, within Echvi_3742at 4457.863 kb on + strand, within Echvi_3742at 4457.863 kb on + strand, within Echvi_3742at 4457.864 kb on - strand, within Echvi_3742at 4457.915 kb on - strand, within Echvi_3742at 4457.954 kb on + strand, within Echvi_3742at 4457.955 kb on - strand, within Echvi_3742at 4458.046 kb on + strand, within Echvi_3742at 4458.047 kb on - strand, within Echvi_3742at 4458.116 kb on - strand, within Echvi_3742at 4458.116 kb on - strand, within Echvi_3742at 4458.116 kb on - strand, within Echvi_3742at 4458.190 kb on + strand, within Echvi_3742at 4458.190 kb on + strand, within Echvi_3742at 4458.213 kb on + strand, within Echvi_3742at 4458.214 kb on - strand, within Echvi_3742at 4458.243 kb on + strand, within Echvi_3742at 4458.267 kb on - strand, within Echvi_3742at 4458.285 kb on - strand, within Echvi_3742at 4458.316 kb on - strand, within Echvi_3742at 4458.316 kb on - strand, within Echvi_3742at 4458.451 kb on + strandat 4458.452 kb on - strandat 4458.458 kb on + strandat 4458.458 kb on + strandat 4458.458 kb on + strandat 4458.480 kb on + strandat 4458.514 kb on + strandat 4458.535 kb on - strandat 4458.555 kb on + strandat 4458.555 kb on + strandat 4458.555 kb on + strandat 4458.605 kb on - strandat 4458.605 kb on - strandat 4458.608 kb on + strandat 4458.609 kb on - strandat 4458.616 kb on + strandat 4458.617 kb on - strandat 4458.617 kb on - strandat 4458.620 kb on + strandat 4458.706 kb on + strandat 4458.707 kb on - strandat 4458.785 kb on + strand, within Echvi_3743at 4458.785 kb on + strand, within Echvi_3743at 4458.870 kb on - strand, within Echvi_3743at 4458.996 kb on + strand, within Echvi_3743at 4459.094 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.098 kb on + strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.099 kb on - strand, within Echvi_3743at 4459.244 kb on + strandat 4459.258 kb on + strandat 4459.259 kb on - strandat 4459.346 kb on - strandat 4459.365 kb on + strandat 4459.414 kb on - strandat 4459.416 kb on - strandat 4459.445 kb on + strandat 4459.446 kb on - strandat 4459.471 kb on + strandat 4459.484 kb on - strandat 4459.535 kb on + strandat 4459.548 kb on + strandat 4459.549 kb on - strandat 4459.549 kb on - strandat 4459.549 kb on - strandat 4459.557 kb on + strandat 4459.557 kb on + strandat 4459.558 kb on - strandat 4459.558 kb on - strandat 4459.578 kb on + strandat 4459.579 kb on - strandat 4459.579 kb on - strandat 4459.579 kb on - strandat 4459.680 kb on - strandat 4459.741 kb on + strandat 4459.742 kb on - strandat 4459.742 kb on - strandat 4459.749 kb on + strandat 4459.794 kb on + strandat 4459.795 kb on - strandat 4459.817 kb on - strandat 4459.817 kb on - strandat 4459.830 kb on + strandat 4459.830 kb on + strandat 4459.830 kb on + strandat 4459.831 kb on - strandat 4459.835 kb on - strandat 4459.905 kb on - strandat 4459.946 kb on - strandat 4459.965 kb on + strand, within Echvi_3744at 4459.965 kb on + strand, within Echvi_3744at 4459.992 kb on - strand, within Echvi_3744at 4460.053 kb on + strand, within Echvi_3744at 4460.053 kb on + strand, within Echvi_3744at 4460.054 kb on - strand, within Echvi_3744at 4460.141 kb on - strandat 4460.141 kb on - strand, within Echvi_3744at 4460.145 kb on - strand, within Echvi_3744at 4460.175 kb on - strandat 4460.175 kb on - strandat 4460.178 kb on - strandat 4460.178 kb on - strandat 4460.193 kb on + strandat 4460.226 kb on - strandat 4460.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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4,457,696 - Echvi_3742 0.34 -0.2
4,457,702 - Echvi_3742 0.34 -0.3
4,457,718 - Echvi_3742 0.35 -0.1
4,457,725 + Echvi_3742 0.36 -1.3
4,457,725 + Echvi_3742 0.36 -0.8
4,457,726 - Echvi_3742 0.36 -1.2
4,457,726 - Echvi_3742 0.36 -1.3
4,457,726 - Echvi_3742 0.36 -0.4
4,457,825 + Echvi_3742 0.43 -0.8
4,457,856 + Echvi_3742 0.46 -0.8
4,457,856 + Echvi_3742 0.46 -1.1
4,457,856 + Echvi_3742 0.46 -2.0
4,457,863 + Echvi_3742 0.46 -2.3
4,457,863 + Echvi_3742 0.46 -1.0
4,457,864 - Echvi_3742 0.46 -0.1
4,457,915 - Echvi_3742 0.50 +1.3
4,457,954 + Echvi_3742 0.53 -1.0
4,457,955 - Echvi_3742 0.53 +1.5
4,458,046 + Echvi_3742 0.60 -0.9
4,458,047 - Echvi_3742 0.60 -0.3
4,458,116 - Echvi_3742 0.65 -2.4
4,458,116 - Echvi_3742 0.65 +1.3
4,458,116 - Echvi_3742 0.65 -0.0
4,458,190 + Echvi_3742 0.71 -1.7
4,458,190 + Echvi_3742 0.71 -1.9
4,458,213 + Echvi_3742 0.72 -3.5
4,458,214 - Echvi_3742 0.72 -0.1
4,458,243 + Echvi_3742 0.75 -1.5
4,458,267 - Echvi_3742 0.76 +0.8
4,458,285 - Echvi_3742 0.78 -2.0
4,458,316 - Echvi_3742 0.80 -0.3
4,458,316 - Echvi_3742 0.80 -0.5
4,458,451 + -2.2
4,458,452 - -2.4
4,458,458 + -1.1
4,458,458 + -0.3
4,458,458 + -0.5
4,458,480 + -2.2
4,458,514 + -1.9
4,458,535 - -0.9
4,458,555 + -1.4
4,458,555 + -0.8
4,458,555 + -1.2
4,458,605 - -1.4
4,458,605 - -0.7
4,458,608 + -1.0
4,458,609 - -0.7
4,458,616 + -0.8
4,458,617 - -1.3
4,458,617 - -0.5
4,458,620 + -1.1
4,458,706 + -1.4
4,458,707 - -0.2
4,458,785 + Echvi_3743 0.16 -0.6
4,458,785 + Echvi_3743 0.16 -1.0
4,458,870 - Echvi_3743 0.31 -0.5
4,458,996 + Echvi_3743 0.53 -1.3
4,459,094 + Echvi_3743 0.70 -0.6
4,459,098 + Echvi_3743 0.71 -0.6
4,459,098 + Echvi_3743 0.71 -0.5
4,459,098 + Echvi_3743 0.71 -1.2
4,459,098 + Echvi_3743 0.71 -0.2
4,459,098 + Echvi_3743 0.71 -1.1
4,459,098 + Echvi_3743 0.71 -0.0
4,459,098 + Echvi_3743 0.71 -0.5
4,459,098 + Echvi_3743 0.71 -1.0
4,459,098 + Echvi_3743 0.71 -2.0
4,459,098 + Echvi_3743 0.71 -1.1
4,459,099 - Echvi_3743 0.71 -1.1
4,459,099 - Echvi_3743 0.71 +0.2
4,459,099 - Echvi_3743 0.71 -1.3
4,459,099 - Echvi_3743 0.71 -0.0
4,459,099 - Echvi_3743 0.71 -0.3
4,459,099 - Echvi_3743 0.71 -0.5
4,459,244 + -0.9
4,459,258 + -1.7
4,459,259 - -0.6
4,459,346 - -0.7
4,459,365 + +0.7
4,459,414 - -0.5
4,459,416 - -0.5
4,459,445 + +0.7
4,459,446 - -0.3
4,459,471 + +1.1
4,459,484 - -0.6
4,459,535 + -0.6
4,459,548 + -1.8
4,459,549 - -0.9
4,459,549 - -0.8
4,459,549 - -0.4
4,459,557 + +0.0
4,459,557 + -0.2
4,459,558 - +0.0
4,459,558 - -0.4
4,459,578 + +0.3
4,459,579 - -0.3
4,459,579 - -0.9
4,459,579 - -0.6
4,459,680 - -0.8
4,459,741 + -0.5
4,459,742 - -1.6
4,459,742 - -0.4
4,459,749 + -2.2
4,459,794 + +0.7
4,459,795 - -1.5
4,459,817 - -1.0
4,459,817 - -0.2
4,459,830 + -1.5
4,459,830 + -0.1
4,459,830 + +0.8
4,459,831 - -0.8
4,459,835 - -0.9
4,459,905 - +0.0
4,459,946 - +0.5
4,459,965 + Echvi_3744 0.15 -0.5
4,459,965 + Echvi_3744 0.15 -0.8
4,459,992 - Echvi_3744 0.25 -0.5
4,460,053 + Echvi_3744 0.49 -0.0
4,460,053 + Echvi_3744 0.49 +2.1
4,460,054 - Echvi_3744 0.49 +0.2
4,460,141 - +1.1
4,460,141 - Echvi_3744 0.84 +0.4
4,460,145 - Echvi_3744 0.85 -0.2
4,460,175 - +0.1
4,460,175 - +0.5
4,460,178 - +0.1
4,460,178 - +0.5
4,460,193 + -0.9
4,460,226 - -0.0
4,460,233 - +0.4

Or see this region's nucleotide sequence