Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2848

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2847 and Echvi_2848 are separated by 19 nucleotidesEchvi_2848 and Echvi_2849 are separated by 378 nucleotides Echvi_2847: Echvi_2847 - SusD family., at 3,412,135 to 3,413,724 _2847 Echvi_2848: Echvi_2848 - hypothetical protein, at 3,413,744 to 3,414,784 _2848 Echvi_2849: Echvi_2849 - fructose-bisphosphate aldolase, class II, yeast/E. coli subtype, at 3,415,163 to 3,416,224 _2849 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -2 -1 0 1 2at 3412.753 kb on + strand, within Echvi_2847at 3412.753 kb on + strand, within Echvi_2847at 3412.754 kb on - strand, within Echvi_2847at 3412.770 kb on - strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.879 kb on + strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.880 kb on - strand, within Echvi_2847at 3412.881 kb on + strand, within Echvi_2847at 3412.912 kb on - strand, within Echvi_2847at 3412.915 kb on + strand, within Echvi_2847at 3412.933 kb on - strand, within Echvi_2847at 3412.942 kb on + strand, within Echvi_2847at 3412.962 kb on + strand, within Echvi_2847at 3412.962 kb on + strand, within Echvi_2847at 3412.963 kb on - strand, within Echvi_2847at 3412.963 kb on - strand, within Echvi_2847at 3412.967 kb on - strand, within Echvi_2847at 3412.967 kb on - strand, within Echvi_2847at 3413.038 kb on - strand, within Echvi_2847at 3413.047 kb on + strand, within Echvi_2847at 3413.047 kb on + strand, within Echvi_2847at 3413.047 kb on + strand, within Echvi_2847at 3413.047 kb on + strand, within Echvi_2847at 3413.048 kb on - strand, within Echvi_2847at 3413.164 kb on + strand, within Echvi_2847at 3413.368 kb on + strand, within Echvi_2847at 3413.377 kb on + strand, within Echvi_2847at 3413.390 kb on + strand, within Echvi_2847at 3413.434 kb on + strand, within Echvi_2847at 3413.434 kb on + strand, within Echvi_2847at 3413.435 kb on - strand, within Echvi_2847at 3413.481 kb on + strand, within Echvi_2847at 3413.481 kb on + strand, within Echvi_2847at 3413.599 kb on + strandat 3413.599 kb on + strandat 3413.601 kb on + strandat 3413.601 kb on + strandat 3413.602 kb on - strandat 3413.602 kb on - strandat 3413.719 kb on + strandat 3413.739 kb on + strandat 3413.740 kb on - strandat 3413.740 kb on - strandat 3413.762 kb on + strandat 3413.850 kb on + strand, within Echvi_2848at 3413.851 kb on - strand, within Echvi_2848at 3414.019 kb on + strand, within Echvi_2848at 3414.019 kb on + strand, within Echvi_2848at 3414.020 kb on - strand, within Echvi_2848at 3414.020 kb on - strand, within Echvi_2848at 3414.051 kb on - strandat 3414.051 kb on - strand, within Echvi_2848at 3414.051 kb on - strand, within Echvi_2848at 3414.221 kb on + strand, within Echvi_2848at 3414.275 kb on + strand, within Echvi_2848at 3414.299 kb on + strand, within Echvi_2848at 3414.319 kb on - strand, within Echvi_2848at 3414.374 kb on + strand, within Echvi_2848at 3414.375 kb on - strand, within Echvi_2848at 3414.442 kb on + strand, within Echvi_2848at 3414.482 kb on - strand, within Echvi_2848at 3414.500 kb on + strand, within Echvi_2848at 3414.646 kb on + strand, within Echvi_2848at 3414.646 kb on + strand, within Echvi_2848at 3414.679 kb on - strand, within Echvi_2848at 3414.722 kb on + strandat 3414.723 kb on - strandat 3414.725 kb on - strandat 3414.742 kb on + strandat 3414.767 kb on - strandat 3414.767 kb on - strandat 3414.927 kb on - strandat 3414.930 kb on + strandat 3414.930 kb on + strandat 3414.930 kb on + strandat 3414.931 kb on - strandat 3415.039 kb on - strandat 3415.080 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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3,412,753 + Echvi_2847 0.39 +0.0
3,412,753 + Echvi_2847 0.39 -0.9
3,412,754 - Echvi_2847 0.39 -0.4
3,412,770 - Echvi_2847 0.40 +1.2
3,412,879 + Echvi_2847 0.47 -0.1
3,412,879 + Echvi_2847 0.47 -0.8
3,412,879 + Echvi_2847 0.47 +0.0
3,412,879 + Echvi_2847 0.47 +0.2
3,412,879 + Echvi_2847 0.47 +0.2
3,412,879 + Echvi_2847 0.47 +0.9
3,412,879 + Echvi_2847 0.47 +0.3
3,412,879 + Echvi_2847 0.47 +0.1
3,412,879 + Echvi_2847 0.47 -1.6
3,412,879 + Echvi_2847 0.47 +0.0
3,412,880 - Echvi_2847 0.47 -0.2
3,412,880 - Echvi_2847 0.47 -0.5
3,412,880 - Echvi_2847 0.47 +1.6
3,412,880 - Echvi_2847 0.47 -1.2
3,412,880 - Echvi_2847 0.47 -1.1
3,412,880 - Echvi_2847 0.47 -0.3
3,412,880 - Echvi_2847 0.47 +2.0
3,412,880 - Echvi_2847 0.47 +0.3
3,412,880 - Echvi_2847 0.47 -0.3
3,412,881 + Echvi_2847 0.47 -1.2
3,412,912 - Echvi_2847 0.49 +0.0
3,412,915 + Echvi_2847 0.49 +0.6
3,412,933 - Echvi_2847 0.50 +0.4
3,412,942 + Echvi_2847 0.51 +0.8
3,412,962 + Echvi_2847 0.52 -2.1
3,412,962 + Echvi_2847 0.52 -1.0
3,412,963 - Echvi_2847 0.52 -1.5
3,412,963 - Echvi_2847 0.52 -0.9
3,412,967 - Echvi_2847 0.52 +0.0
3,412,967 - Echvi_2847 0.52 +0.2
3,413,038 - Echvi_2847 0.57 +0.1
3,413,047 + Echvi_2847 0.57 -0.6
3,413,047 + Echvi_2847 0.57 -0.4
3,413,047 + Echvi_2847 0.57 +0.0
3,413,047 + Echvi_2847 0.57 +0.6
3,413,048 - Echvi_2847 0.57 -0.1
3,413,164 + Echvi_2847 0.65 +0.3
3,413,368 + Echvi_2847 0.78 -0.2
3,413,377 + Echvi_2847 0.78 -0.2
3,413,390 + Echvi_2847 0.79 +0.8
3,413,434 + Echvi_2847 0.82 +1.2
3,413,434 + Echvi_2847 0.82 -1.3
3,413,435 - Echvi_2847 0.82 +0.0
3,413,481 + Echvi_2847 0.85 -0.4
3,413,481 + Echvi_2847 0.85 -0.2
3,413,599 + -0.5
3,413,599 + -0.4
3,413,601 + +0.3
3,413,601 + -0.4
3,413,602 - +0.6
3,413,602 - -0.2
3,413,719 + -0.0
3,413,739 + +1.1
3,413,740 - +0.5
3,413,740 - +1.3
3,413,762 + -1.1
3,413,850 + Echvi_2848 0.10 -0.5
3,413,851 - Echvi_2848 0.10 -1.2
3,414,019 + Echvi_2848 0.26 -0.7
3,414,019 + Echvi_2848 0.26 -0.5
3,414,020 - Echvi_2848 0.27 +0.6
3,414,020 - Echvi_2848 0.27 -0.3
3,414,051 - +2.6
3,414,051 - Echvi_2848 0.29 +2.0
3,414,051 - Echvi_2848 0.29 +0.8
3,414,221 + Echvi_2848 0.46 -0.7
3,414,275 + Echvi_2848 0.51 -0.4
3,414,299 + Echvi_2848 0.53 -0.2
3,414,319 - Echvi_2848 0.55 -1.2
3,414,374 + Echvi_2848 0.61 -0.5
3,414,375 - Echvi_2848 0.61 -0.7
3,414,442 + Echvi_2848 0.67 +0.1
3,414,482 - Echvi_2848 0.71 -1.6
3,414,500 + Echvi_2848 0.73 -1.2
3,414,646 + Echvi_2848 0.87 +0.4
3,414,646 + Echvi_2848 0.87 -1.8
3,414,679 - Echvi_2848 0.90 -0.6
3,414,722 + +0.6
3,414,723 - +0.7
3,414,725 - -0.3
3,414,742 + +0.1
3,414,767 - +0.6
3,414,767 - -1.3
3,414,927 - -2.1
3,414,930 + +0.6
3,414,930 + +0.3
3,414,930 + -0.3
3,414,931 - +1.3
3,415,039 - -1.2
3,415,080 + -0.1

Or see this region's nucleotide sequence