Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2812

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2811 and Echvi_2812 are separated by 350 nucleotidesEchvi_2812 and Echvi_2813 are separated by 464 nucleotides Echvi_2811: Echvi_2811 - ABC-type sugar transport system, periplasmic component, at 3,363,008 to 3,365,749 _2811 Echvi_2812: Echvi_2812 - hypothetical protein, at 3,366,100 to 3,366,774 _2812 Echvi_2813: Echvi_2813 - Amino acid permeases, at 3,367,239 to 3,369,545 _2813 Position (kb) 3366 3367Strain fitness (log2 ratio) -2 -1 0 1 2at 3365.109 kb on - strand, within Echvi_2811at 3365.234 kb on + strand, within Echvi_2811at 3365.245 kb on + strand, within Echvi_2811at 3365.328 kb on + strand, within Echvi_2811at 3365.328 kb on + strand, within Echvi_2811at 3365.329 kb on - strand, within Echvi_2811at 3365.355 kb on + strand, within Echvi_2811at 3365.356 kb on - strand, within Echvi_2811at 3365.356 kb on - strand, within Echvi_2811at 3365.356 kb on - strand, within Echvi_2811at 3365.356 kb on - strand, within Echvi_2811at 3365.360 kb on - strand, within Echvi_2811at 3365.373 kb on + strand, within Echvi_2811at 3365.373 kb on + strand, within Echvi_2811at 3365.374 kb on - strand, within Echvi_2811at 3365.374 kb on - strand, within Echvi_2811at 3365.374 kb on - strand, within Echvi_2811at 3365.383 kb on - strandat 3365.383 kb on - strand, within Echvi_2811at 3365.397 kb on - strand, within Echvi_2811at 3365.397 kb on - strand, within Echvi_2811at 3365.409 kb on - strand, within Echvi_2811at 3365.425 kb on + strand, within Echvi_2811at 3365.426 kb on - strand, within Echvi_2811at 3365.604 kb on + strandat 3365.645 kb on + strandat 3365.646 kb on - strandat 3365.646 kb on - strandat 3365.671 kb on - strandat 3365.714 kb on + strandat 3365.714 kb on + strandat 3365.730 kb on - strandat 3365.730 kb on - strandat 3365.786 kb on + strandat 3365.787 kb on - strandat 3365.806 kb on + strandat 3365.821 kb on + strandat 3365.946 kb on - strandat 3365.961 kb on - strandat 3365.991 kb on + strandat 3365.991 kb on + strandat 3365.991 kb on + strandat 3365.992 kb on - strandat 3365.995 kb on - strandat 3365.995 kb on - strandat 3365.996 kb on + strandat 3365.996 kb on + strandat 3366.000 kb on + strandat 3366.101 kb on + strandat 3366.101 kb on + strandat 3366.209 kb on - strand, within Echvi_2812at 3366.237 kb on + strand, within Echvi_2812at 3366.309 kb on + strand, within Echvi_2812at 3366.310 kb on - strand, within Echvi_2812at 3366.332 kb on - strand, within Echvi_2812at 3366.332 kb on - strand, within Echvi_2812at 3366.334 kb on + strand, within Echvi_2812at 3366.356 kb on + strand, within Echvi_2812at 3366.447 kb on - strand, within Echvi_2812at 3366.482 kb on + strand, within Echvi_2812at 3366.482 kb on + strand, within Echvi_2812at 3366.531 kb on - strand, within Echvi_2812at 3366.540 kb on + strand, within Echvi_2812at 3366.577 kb on + strand, within Echvi_2812at 3366.583 kb on + strand, within Echvi_2812at 3366.584 kb on - strand, within Echvi_2812at 3366.592 kb on - strand, within Echvi_2812at 3366.592 kb on - strand, within Echvi_2812at 3366.592 kb on - strand, within Echvi_2812at 3366.650 kb on + strand, within Echvi_2812at 3366.650 kb on + strand, within Echvi_2812at 3366.651 kb on - strand, within Echvi_2812at 3366.695 kb on + strand, within Echvi_2812at 3366.695 kb on + strand, within Echvi_2812at 3366.754 kb on - strandat 3366.810 kb on - strandat 3366.904 kb on + strandat 3366.909 kb on + strandat 3366.909 kb on + strandat 3366.933 kb on + strandat 3366.933 kb on + strandat 3366.934 kb on - strandat 3366.934 kb on - strandat 3366.934 kb on - strandat 3366.934 kb on - strandat 3366.945 kb on + strandat 3366.946 kb on - strandat 3366.964 kb on + strandat 3366.964 kb on + strandat 3366.965 kb on - strandat 3366.965 kb on - strandat 3366.978 kb on + strandat 3367.007 kb on + strandat 3367.008 kb on - strandat 3367.009 kb on + strandat 3367.009 kb on + strandat 3367.009 kb on + strandat 3367.010 kb on - strandat 3367.010 kb on - strandat 3367.010 kb on - strandat 3367.017 kb on + strandat 3367.042 kb on + strandat 3367.042 kb on + strandat 3367.107 kb on + strandat 3367.213 kb on - strandat 3367.217 kb on + strandat 3367.217 kb on + strandat 3367.217 kb on + strandat 3367.218 kb on - strandat 3367.218 kb on - strandat 3367.218 kb on - strandat 3367.229 kb on + strandat 3367.238 kb on + strandat 3367.273 kb on + strandat 3367.273 kb on + strandat 3367.273 kb on + strandat 3367.273 kb on + strandat 3367.364 kb on - strandat 3367.406 kb on + strandat 3367.407 kb on - strandat 3367.482 kb on + strand, within Echvi_2813at 3367.482 kb on + strand, within Echvi_2813at 3367.483 kb on - strand, within Echvi_2813at 3367.483 kb on - strand, within Echvi_2813at 3367.483 kb on - strand, within Echvi_2813at 3367.513 kb on + strand, within Echvi_2813at 3367.578 kb on + strand, within Echvi_2813at 3367.590 kb on - strand, within Echvi_2813at 3367.623 kb on - strand, within Echvi_2813at 3367.645 kb on + strand, within Echvi_2813at 3367.646 kb on - strand, within Echvi_2813at 3367.653 kb on + strand, within Echvi_2813at 3367.657 kb on + strand, within Echvi_2813at 3367.657 kb on + strand, within Echvi_2813at 3367.657 kb on + strand, within Echvi_2813at 3367.657 kb on + strand, within Echvi_2813at 3367.658 kb on - strand, within Echvi_2813at 3367.658 kb on - strand, within Echvi_2813at 3367.689 kb on + strand, within Echvi_2813at 3367.690 kb on - strand, within Echvi_2813at 3367.690 kb on - strand, within Echvi_2813at 3367.690 kb on - strand, within Echvi_2813at 3367.745 kb on + strand, within Echvi_2813

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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3,365,109 - Echvi_2811 0.77 -0.2
3,365,234 + Echvi_2811 0.81 -0.1
3,365,245 + Echvi_2811 0.82 -0.1
3,365,328 + Echvi_2811 0.85 -0.4
3,365,328 + Echvi_2811 0.85 -0.8
3,365,329 - Echvi_2811 0.85 -0.6
3,365,355 + Echvi_2811 0.86 +0.6
3,365,356 - Echvi_2811 0.86 +0.2
3,365,356 - Echvi_2811 0.86 -1.0
3,365,356 - Echvi_2811 0.86 -1.2
3,365,356 - Echvi_2811 0.86 -0.4
3,365,360 - Echvi_2811 0.86 +0.0
3,365,373 + Echvi_2811 0.86 +0.5
3,365,373 + Echvi_2811 0.86 -0.3
3,365,374 - Echvi_2811 0.86 -0.3
3,365,374 - Echvi_2811 0.86 +0.8
3,365,374 - Echvi_2811 0.86 -0.1
3,365,383 - +1.6
3,365,383 - Echvi_2811 0.87 -0.2
3,365,397 - Echvi_2811 0.87 +0.1
3,365,397 - Echvi_2811 0.87 +2.6
3,365,409 - Echvi_2811 0.88 -0.4
3,365,425 + Echvi_2811 0.88 -0.7
3,365,426 - Echvi_2811 0.88 +0.9
3,365,604 + +0.2
3,365,645 + +1.6
3,365,646 - -0.9
3,365,646 - -0.3
3,365,671 - -0.6
3,365,714 + +1.4
3,365,714 + +0.6
3,365,730 - -0.6
3,365,730 - +0.1
3,365,786 + +0.8
3,365,787 - +0.5
3,365,806 + +0.4
3,365,821 + +2.0
3,365,946 - +0.1
3,365,961 - -0.9
3,365,991 + +1.8
3,365,991 + +0.8
3,365,991 + -0.5
3,365,992 - +1.1
3,365,995 - -1.6
3,365,995 - +0.7
3,365,996 + +0.8
3,365,996 + +0.8
3,366,000 + -0.4
3,366,101 + +0.0
3,366,101 + +1.3
3,366,209 - Echvi_2812 0.16 -0.2
3,366,237 + Echvi_2812 0.20 +0.8
3,366,309 + Echvi_2812 0.31 -0.6
3,366,310 - Echvi_2812 0.31 -0.2
3,366,332 - Echvi_2812 0.34 +0.8
3,366,332 - Echvi_2812 0.34 +0.6
3,366,334 + Echvi_2812 0.35 -0.0
3,366,356 + Echvi_2812 0.38 -0.5
3,366,447 - Echvi_2812 0.51 +1.3
3,366,482 + Echvi_2812 0.57 -0.3
3,366,482 + Echvi_2812 0.57 -2.2
3,366,531 - Echvi_2812 0.64 +1.1
3,366,540 + Echvi_2812 0.65 +0.2
3,366,577 + Echvi_2812 0.71 +0.2
3,366,583 + Echvi_2812 0.72 -0.1
3,366,584 - Echvi_2812 0.72 +0.9
3,366,592 - Echvi_2812 0.73 +1.2
3,366,592 - Echvi_2812 0.73 +0.6
3,366,592 - Echvi_2812 0.73 +0.5
3,366,650 + Echvi_2812 0.81 +0.4
3,366,650 + Echvi_2812 0.81 +0.3
3,366,651 - Echvi_2812 0.82 +1.0
3,366,695 + Echvi_2812 0.88 +0.7
3,366,695 + Echvi_2812 0.88 +2.0
3,366,754 - +0.6
3,366,810 - -0.5
3,366,904 + +0.8
3,366,909 + +1.2
3,366,909 + -0.6
3,366,933 + +0.1
3,366,933 + -0.4
3,366,934 - -1.1
3,366,934 - +0.0
3,366,934 - +0.4
3,366,934 - -0.3
3,366,945 + +0.3
3,366,946 - +1.3
3,366,964 + -0.6
3,366,964 + +0.3
3,366,965 - -0.1
3,366,965 - +0.3
3,366,978 + +1.6
3,367,007 + +1.0
3,367,008 - -0.7
3,367,009 + +0.6
3,367,009 + -0.6
3,367,009 + +0.6
3,367,010 - -2.4
3,367,010 - -0.6
3,367,010 - +0.6
3,367,017 + +0.3
3,367,042 + +1.6
3,367,042 + +0.3
3,367,107 + +0.0
3,367,213 - +0.0
3,367,217 + -0.2
3,367,217 + -0.8
3,367,217 + -0.8
3,367,218 - +0.3
3,367,218 - +0.1
3,367,218 - -0.0
3,367,229 + -0.7
3,367,238 + -2.6
3,367,273 + +0.5
3,367,273 + +0.3
3,367,273 + +0.1
3,367,273 + -0.5
3,367,364 - +0.9
3,367,406 + +0.2
3,367,407 - -2.2
3,367,482 + Echvi_2813 0.11 +0.5
3,367,482 + Echvi_2813 0.11 +0.1
3,367,483 - Echvi_2813 0.11 +0.2
3,367,483 - Echvi_2813 0.11 -1.2
3,367,483 - Echvi_2813 0.11 +0.0
3,367,513 + Echvi_2813 0.12 +0.9
3,367,578 + Echvi_2813 0.15 +0.5
3,367,590 - Echvi_2813 0.15 +0.9
3,367,623 - Echvi_2813 0.17 +0.7
3,367,645 + Echvi_2813 0.18 +1.1
3,367,646 - Echvi_2813 0.18 +0.2
3,367,653 + Echvi_2813 0.18 -0.7
3,367,657 + Echvi_2813 0.18 +1.5
3,367,657 + Echvi_2813 0.18 -0.7
3,367,657 + Echvi_2813 0.18 +0.1
3,367,657 + Echvi_2813 0.18 -0.4
3,367,658 - Echvi_2813 0.18 -2.1
3,367,658 - Echvi_2813 0.18 -0.5
3,367,689 + Echvi_2813 0.20 -0.2
3,367,690 - Echvi_2813 0.20 -0.5
3,367,690 - Echvi_2813 0.20 +0.1
3,367,690 - Echvi_2813 0.20 -1.7
3,367,745 + Echvi_2813 0.22 -0.5

Or see this region's nucleotide sequence