Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2310

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2309 and Echvi_2310 are separated by 52 nucleotidesEchvi_2310 and Echvi_2311 overlap by 4 nucleotides Echvi_2309: Echvi_2309 - Outer membrane protein/protective antigen OMA87, at 2,743,444 to 2,744,928 _2309 Echvi_2310: Echvi_2310 - conserved hypothetical protein YidD, at 2,744,981 to 2,745,202 _2310 Echvi_2311: Echvi_2311 - Prolipoprotein diacylglyceryltransferase, at 2,745,199 to 2,746,302 _2311 Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2744.007 kb on - strand, within Echvi_2309at 2744.007 kb on - strand, within Echvi_2309at 2744.011 kb on + strand, within Echvi_2309at 2744.011 kb on + strand, within Echvi_2309at 2744.011 kb on + strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.012 kb on - strand, within Echvi_2309at 2744.039 kb on + strand, within Echvi_2309at 2744.058 kb on - strand, within Echvi_2309at 2744.107 kb on + strand, within Echvi_2309at 2744.108 kb on - strand, within Echvi_2309at 2744.108 kb on - strand, within Echvi_2309at 2744.151 kb on - strand, within Echvi_2309at 2744.162 kb on + strand, within Echvi_2309at 2744.184 kb on - strand, within Echvi_2309at 2744.232 kb on + strand, within Echvi_2309at 2744.237 kb on + strand, within Echvi_2309at 2744.237 kb on + strand, within Echvi_2309at 2744.242 kb on + strand, within Echvi_2309at 2744.253 kb on + strand, within Echvi_2309at 2744.254 kb on - strand, within Echvi_2309at 2744.256 kb on - strand, within Echvi_2309at 2744.286 kb on + strand, within Echvi_2309at 2744.289 kb on + strand, within Echvi_2309at 2744.289 kb on + strand, within Echvi_2309at 2744.335 kb on - strand, within Echvi_2309at 2744.335 kb on - strand, within Echvi_2309at 2744.335 kb on - strand, within Echvi_2309at 2744.336 kb on + strand, within Echvi_2309at 2744.336 kb on + strand, within Echvi_2309at 2744.336 kb on + strand, within Echvi_2309at 2744.348 kb on + strand, within Echvi_2309at 2744.349 kb on - strand, within Echvi_2309at 2744.349 kb on - strand, within Echvi_2309at 2744.425 kb on - strand, within Echvi_2309at 2744.444 kb on + strand, within Echvi_2309at 2744.530 kb on + strand, within Echvi_2309at 2744.530 kb on + strand, within Echvi_2309at 2744.531 kb on - strand, within Echvi_2309at 2744.531 kb on - strand, within Echvi_2309at 2744.534 kb on + strand, within Echvi_2309at 2744.534 kb on + strand, within Echvi_2309at 2744.535 kb on - strand, within Echvi_2309at 2744.566 kb on + strand, within Echvi_2309at 2744.811 kb on + strandat 2744.811 kb on + strandat 2744.812 kb on - strandat 2744.812 kb on - strandat 2744.812 kb on - strandat 2744.870 kb on - strandat 2744.870 kb on - strandat 2744.872 kb on + strandat 2744.873 kb on - strandat 2744.876 kb on - strandat 2744.895 kb on - strandat 2744.989 kb on + strandat 2745.026 kb on + strand, within Echvi_2310at 2745.032 kb on + strand, within Echvi_2310at 2745.064 kb on + strand, within Echvi_2310at 2745.064 kb on + strand, within Echvi_2310at 2745.065 kb on - strand, within Echvi_2310at 2745.065 kb on - strand, within Echvi_2310at 2745.068 kb on + strand, within Echvi_2310at 2745.069 kb on - strand, within Echvi_2310at 2745.090 kb on - strand, within Echvi_2310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,744,007 - Echvi_2309 0.38 +0.1
2,744,007 - Echvi_2309 0.38 +0.1
2,744,011 + Echvi_2309 0.38 -0.9
2,744,011 + Echvi_2309 0.38 -0.6
2,744,011 + Echvi_2309 0.38 +1.7
2,744,012 - Echvi_2309 0.38 -0.7
2,744,012 - Echvi_2309 0.38 +0.5
2,744,012 - Echvi_2309 0.38 -0.3
2,744,012 - Echvi_2309 0.38 +0.9
2,744,012 - Echvi_2309 0.38 +0.9
2,744,012 - Echvi_2309 0.38 -0.5
2,744,039 + Echvi_2309 0.40 -0.1
2,744,058 - Echvi_2309 0.41 -0.4
2,744,107 + Echvi_2309 0.45 +0.6
2,744,108 - Echvi_2309 0.45 +0.3
2,744,108 - Echvi_2309 0.45 -0.0
2,744,151 - Echvi_2309 0.48 +0.4
2,744,162 + Echvi_2309 0.48 -0.2
2,744,184 - Echvi_2309 0.50 -1.0
2,744,232 + Echvi_2309 0.53 +1.1
2,744,237 + Echvi_2309 0.53 +3.2
2,744,237 + Echvi_2309 0.53 -0.0
2,744,242 + Echvi_2309 0.54 +0.1
2,744,253 + Echvi_2309 0.54 +0.7
2,744,254 - Echvi_2309 0.55 -0.2
2,744,256 - Echvi_2309 0.55 -0.1
2,744,286 + Echvi_2309 0.57 -0.6
2,744,289 + Echvi_2309 0.57 +0.1
2,744,289 + Echvi_2309 0.57 +0.8
2,744,335 - Echvi_2309 0.60 -0.3
2,744,335 - Echvi_2309 0.60 +1.7
2,744,335 - Echvi_2309 0.60 +0.4
2,744,336 + Echvi_2309 0.60 -0.7
2,744,336 + Echvi_2309 0.60 +1.0
2,744,336 + Echvi_2309 0.60 +0.2
2,744,348 + Echvi_2309 0.61 +0.3
2,744,349 - Echvi_2309 0.61 +0.2
2,744,349 - Echvi_2309 0.61 -0.2
2,744,425 - Echvi_2309 0.66 -0.1
2,744,444 + Echvi_2309 0.67 -0.5
2,744,530 + Echvi_2309 0.73 +0.2
2,744,530 + Echvi_2309 0.73 +1.0
2,744,531 - Echvi_2309 0.73 +0.5
2,744,531 - Echvi_2309 0.73 -0.2
2,744,534 + Echvi_2309 0.73 +1.0
2,744,534 + Echvi_2309 0.73 +1.3
2,744,535 - Echvi_2309 0.73 +0.4
2,744,566 + Echvi_2309 0.76 -0.5
2,744,811 + +0.7
2,744,811 + -1.2
2,744,812 - +1.7
2,744,812 - -0.2
2,744,812 - -0.4
2,744,870 - -2.3
2,744,870 - -0.7
2,744,872 + -1.3
2,744,873 - +1.2
2,744,876 - -0.2
2,744,895 - +0.1
2,744,989 + +0.8
2,745,026 + Echvi_2310 0.20 +2.0
2,745,032 + Echvi_2310 0.23 +2.2
2,745,064 + Echvi_2310 0.37 +0.3
2,745,064 + Echvi_2310 0.37 +0.1
2,745,065 - Echvi_2310 0.38 +0.9
2,745,065 - Echvi_2310 0.38 +0.4
2,745,068 + Echvi_2310 0.39 +0.9
2,745,069 - Echvi_2310 0.40 -0.8
2,745,090 - Echvi_2310 0.49 +0.5

Or see this region's nucleotide sequence