Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2309 and Echvi_2310 are separated by 52 nucleotides Echvi_2310 and Echvi_2311 overlap by 4 nucleotides
Echvi_2309: Echvi_2309 - Outer membrane protein/protective antigen OMA87, at 2,743,444 to 2,744,928
_2309
Echvi_2310: Echvi_2310 - conserved hypothetical protein YidD, at 2,744,981 to 2,745,202
_2310
Echvi_2311: Echvi_2311 - Prolipoprotein diacylglyceryltransferase, at 2,745,199 to 2,746,302
_2311
Position (kb)
2744
2745
2746 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2744.007 kb on - strand, within Echvi_2309 at 2744.007 kb on - strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.011 kb on + strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.012 kb on - strand, within Echvi_2309 at 2744.039 kb on + strand, within Echvi_2309 at 2744.058 kb on - strand, within Echvi_2309 at 2744.107 kb on + strand, within Echvi_2309 at 2744.108 kb on - strand, within Echvi_2309 at 2744.108 kb on - strand, within Echvi_2309 at 2744.151 kb on - strand, within Echvi_2309 at 2744.162 kb on + strand, within Echvi_2309 at 2744.184 kb on - strand, within Echvi_2309 at 2744.232 kb on + strand, within Echvi_2309 at 2744.237 kb on + strand, within Echvi_2309 at 2744.237 kb on + strand, within Echvi_2309 at 2744.242 kb on + strand, within Echvi_2309 at 2744.253 kb on + strand, within Echvi_2309 at 2744.254 kb on - strand, within Echvi_2309 at 2744.256 kb on - strand, within Echvi_2309 at 2744.286 kb on + strand, within Echvi_2309 at 2744.289 kb on + strand, within Echvi_2309 at 2744.289 kb on + strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.335 kb on - strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.336 kb on + strand, within Echvi_2309 at 2744.348 kb on + strand, within Echvi_2309 at 2744.349 kb on - strand, within Echvi_2309 at 2744.349 kb on - strand, within Echvi_2309 at 2744.425 kb on - strand, within Echvi_2309 at 2744.444 kb on + strand, within Echvi_2309 at 2744.530 kb on + strand, within Echvi_2309 at 2744.530 kb on + strand, within Echvi_2309 at 2744.531 kb on - strand, within Echvi_2309 at 2744.531 kb on - strand, within Echvi_2309 at 2744.534 kb on + strand, within Echvi_2309 at 2744.534 kb on + strand, within Echvi_2309 at 2744.535 kb on - strand, within Echvi_2309 at 2744.566 kb on + strand, within Echvi_2309 at 2744.811 kb on + strand at 2744.811 kb on + strand at 2744.812 kb on - strand at 2744.812 kb on - strand at 2744.812 kb on - strand at 2744.870 kb on - strand at 2744.870 kb on - strand at 2744.872 kb on + strand at 2744.873 kb on - strand at 2744.876 kb on - strand at 2744.895 kb on - strand at 2744.989 kb on + strand at 2745.026 kb on + strand, within Echvi_2310 at 2745.032 kb on + strand, within Echvi_2310 at 2745.064 kb on + strand, within Echvi_2310 at 2745.064 kb on + strand, within Echvi_2310 at 2745.065 kb on - strand, within Echvi_2310 at 2745.065 kb on - strand, within Echvi_2310 at 2745.068 kb on + strand, within Echvi_2310 at 2745.069 kb on - strand, within Echvi_2310 at 2745.090 kb on - strand, within Echvi_2310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 2,744,007 - Echvi_2309 0.38 +0.1 2,744,007 - Echvi_2309 0.38 +0.1 2,744,011 + Echvi_2309 0.38 -0.9 2,744,011 + Echvi_2309 0.38 -0.6 2,744,011 + Echvi_2309 0.38 +1.7 2,744,012 - Echvi_2309 0.38 -0.7 2,744,012 - Echvi_2309 0.38 +0.5 2,744,012 - Echvi_2309 0.38 -0.3 2,744,012 - Echvi_2309 0.38 +0.9 2,744,012 - Echvi_2309 0.38 +0.9 2,744,012 - Echvi_2309 0.38 -0.5 2,744,039 + Echvi_2309 0.40 -0.1 2,744,058 - Echvi_2309 0.41 -0.4 2,744,107 + Echvi_2309 0.45 +0.6 2,744,108 - Echvi_2309 0.45 +0.3 2,744,108 - Echvi_2309 0.45 -0.0 2,744,151 - Echvi_2309 0.48 +0.4 2,744,162 + Echvi_2309 0.48 -0.2 2,744,184 - Echvi_2309 0.50 -1.0 2,744,232 + Echvi_2309 0.53 +1.1 2,744,237 + Echvi_2309 0.53 +3.2 2,744,237 + Echvi_2309 0.53 -0.0 2,744,242 + Echvi_2309 0.54 +0.1 2,744,253 + Echvi_2309 0.54 +0.7 2,744,254 - Echvi_2309 0.55 -0.2 2,744,256 - Echvi_2309 0.55 -0.1 2,744,286 + Echvi_2309 0.57 -0.6 2,744,289 + Echvi_2309 0.57 +0.1 2,744,289 + Echvi_2309 0.57 +0.8 2,744,335 - Echvi_2309 0.60 -0.3 2,744,335 - Echvi_2309 0.60 +1.7 2,744,335 - Echvi_2309 0.60 +0.4 2,744,336 + Echvi_2309 0.60 -0.7 2,744,336 + Echvi_2309 0.60 +1.0 2,744,336 + Echvi_2309 0.60 +0.2 2,744,348 + Echvi_2309 0.61 +0.3 2,744,349 - Echvi_2309 0.61 +0.2 2,744,349 - Echvi_2309 0.61 -0.2 2,744,425 - Echvi_2309 0.66 -0.1 2,744,444 + Echvi_2309 0.67 -0.5 2,744,530 + Echvi_2309 0.73 +0.2 2,744,530 + Echvi_2309 0.73 +1.0 2,744,531 - Echvi_2309 0.73 +0.5 2,744,531 - Echvi_2309 0.73 -0.2 2,744,534 + Echvi_2309 0.73 +1.0 2,744,534 + Echvi_2309 0.73 +1.3 2,744,535 - Echvi_2309 0.73 +0.4 2,744,566 + Echvi_2309 0.76 -0.5 2,744,811 + +0.7 2,744,811 + -1.2 2,744,812 - +1.7 2,744,812 - -0.2 2,744,812 - -0.4 2,744,870 - -2.3 2,744,870 - -0.7 2,744,872 + -1.3 2,744,873 - +1.2 2,744,876 - -0.2 2,744,895 - +0.1 2,744,989 + +0.8 2,745,026 + Echvi_2310 0.20 +2.0 2,745,032 + Echvi_2310 0.23 +2.2 2,745,064 + Echvi_2310 0.37 +0.3 2,745,064 + Echvi_2310 0.37 +0.1 2,745,065 - Echvi_2310 0.38 +0.9 2,745,065 - Echvi_2310 0.38 +0.4 2,745,068 + Echvi_2310 0.39 +0.9 2,745,069 - Echvi_2310 0.40 -0.8 2,745,090 - Echvi_2310 0.49 +0.5
Or see this region's nucleotide sequence