Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2017

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2015 and Echvi_2016 are separated by 14 nucleotidesEchvi_2016 and Echvi_2017 are separated by 119 nucleotidesEchvi_2017 and Echvi_2018 are separated by 86 nucleotides Echvi_2015: Echvi_2015 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 2,367,951 to 2,368,634 _2015 Echvi_2016: Echvi_2016 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 2,368,649 to 2,369,260 _2016 Echvi_2017: Echvi_2017 - Uncharacterized conserved protein, at 2,369,380 to 2,369,946 _2017 Echvi_2018: Echvi_2018 - Transposase and inactivated derivatives, at 2,370,033 to 2,371,265 _2018 Position (kb) 2369 2370Strain fitness (log2 ratio) -2 -1 0 1 2at 2368.600 kb on + strandat 2368.624 kb on + strandat 2369.353 kb on + strandat 2369.379 kb on + strandat 2369.389 kb on - strandat 2369.410 kb on + strandat 2369.459 kb on - strand, within Echvi_2017at 2369.460 kb on + strand, within Echvi_2017at 2369.461 kb on - strand, within Echvi_2017at 2369.461 kb on - strand, within Echvi_2017at 2369.470 kb on + strand, within Echvi_2017at 2369.470 kb on + strand, within Echvi_2017at 2369.471 kb on - strand, within Echvi_2017at 2369.472 kb on + strand, within Echvi_2017at 2369.472 kb on + strand, within Echvi_2017at 2369.473 kb on - strand, within Echvi_2017at 2369.547 kb on + strand, within Echvi_2017at 2369.548 kb on - strand, within Echvi_2017at 2369.553 kb on + strand, within Echvi_2017at 2369.561 kb on - strand, within Echvi_2017at 2369.637 kb on + strand, within Echvi_2017at 2369.638 kb on - strand, within Echvi_2017at 2369.644 kb on + strand, within Echvi_2017at 2369.647 kb on - strand, within Echvi_2017at 2369.748 kb on + strand, within Echvi_2017at 2369.765 kb on + strand, within Echvi_2017at 2369.765 kb on + strand, within Echvi_2017at 2369.801 kb on - strand, within Echvi_2017at 2369.801 kb on - strand, within Echvi_2017at 2369.815 kb on + strand, within Echvi_2017at 2369.816 kb on - strand, within Echvi_2017at 2369.816 kb on - strand, within Echvi_2017at 2369.816 kb on - strand, within Echvi_2017at 2369.817 kb on + strand, within Echvi_2017at 2369.818 kb on - strand, within Echvi_2017at 2369.868 kb on - strand, within Echvi_2017at 2369.868 kb on - strand, within Echvi_2017at 2369.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,368,600 + +0.5
2,368,624 + -1.4
2,369,353 + -0.9
2,369,379 + -0.6
2,369,389 - -2.3
2,369,410 + +2.0
2,369,459 - Echvi_2017 0.14 +0.7
2,369,460 + Echvi_2017 0.14 -0.4
2,369,461 - Echvi_2017 0.14 -0.1
2,369,461 - Echvi_2017 0.14 +0.4
2,369,470 + Echvi_2017 0.16 -0.5
2,369,470 + Echvi_2017 0.16 -1.0
2,369,471 - Echvi_2017 0.16 -2.1
2,369,472 + Echvi_2017 0.16 +0.1
2,369,472 + Echvi_2017 0.16 -0.3
2,369,473 - Echvi_2017 0.16 -1.3
2,369,547 + Echvi_2017 0.29 -1.0
2,369,548 - Echvi_2017 0.30 -0.6
2,369,553 + Echvi_2017 0.31 +0.1
2,369,561 - Echvi_2017 0.32 -0.9
2,369,637 + Echvi_2017 0.45 -0.0
2,369,638 - Echvi_2017 0.46 +0.1
2,369,644 + Echvi_2017 0.47 +0.6
2,369,647 - Echvi_2017 0.47 -1.2
2,369,748 + Echvi_2017 0.65 +1.3
2,369,765 + Echvi_2017 0.68 +1.1
2,369,765 + Echvi_2017 0.68 +0.9
2,369,801 - Echvi_2017 0.74 +0.7
2,369,801 - Echvi_2017 0.74 -1.0
2,369,815 + Echvi_2017 0.77 +1.1
2,369,816 - Echvi_2017 0.77 -0.7
2,369,816 - Echvi_2017 0.77 -2.0
2,369,816 - Echvi_2017 0.77 -1.3
2,369,817 + Echvi_2017 0.77 -0.3
2,369,818 - Echvi_2017 0.77 -2.5
2,369,868 - Echvi_2017 0.86 -0.9
2,369,868 - Echvi_2017 0.86 -0.5
2,369,902 - +1.1

Or see this region's nucleotide sequence