Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1931

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1929 and Echvi_1930 are separated by 83 nucleotidesEchvi_1930 and Echvi_1931 are separated by 338 nucleotidesEchvi_1931 and Echvi_1932 are separated by 404 nucleotides Echvi_1929: Echvi_1929 - hypothetical protein, at 2,272,378 to 2,272,560 _1929 Echvi_1930: Echvi_1930 - DNA repair proteins, at 2,272,644 to 2,273,105 _1930 Echvi_1931: Echvi_1931 - phage/plasmid-related protein TIGR03299, at 2,273,444 to 2,274,508 _1931 Echvi_1932: Echvi_1932 - KAP family P-loop domain., at 2,274,913 to 2,276,730 _1932 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -1 0 1 2at 2272.492 kb on + strand, within Echvi_1929at 2272.496 kb on - strand, within Echvi_1929at 2272.504 kb on + strand, within Echvi_1929at 2272.504 kb on + strand, within Echvi_1929at 2272.518 kb on + strand, within Echvi_1929at 2272.556 kb on + strandat 2272.556 kb on + strandat 2272.556 kb on + strandat 2272.560 kb on + strandat 2272.615 kb on + strandat 2272.616 kb on - strandat 2272.616 kb on - strandat 2272.619 kb on - strandat 2272.715 kb on + strand, within Echvi_1930at 2272.990 kb on - strand, within Echvi_1930at 2272.993 kb on - strand, within Echvi_1930at 2272.993 kb on - strand, within Echvi_1930at 2273.049 kb on - strand, within Echvi_1930at 2273.218 kb on - strandat 2273.225 kb on - strandat 2273.270 kb on + strandat 2273.270 kb on + strandat 2273.302 kb on + strandat 2273.325 kb on + strandat 2273.491 kb on + strandat 2273.509 kb on + strandat 2273.564 kb on - strand, within Echvi_1931at 2273.604 kb on + strand, within Echvi_1931at 2273.604 kb on + strand, within Echvi_1931at 2273.626 kb on + strand, within Echvi_1931at 2273.773 kb on + strand, within Echvi_1931at 2273.773 kb on + strand, within Echvi_1931at 2273.774 kb on - strand, within Echvi_1931at 2273.801 kb on - strand, within Echvi_1931at 2273.908 kb on + strand, within Echvi_1931at 2273.909 kb on - strand, within Echvi_1931at 2273.909 kb on - strand, within Echvi_1931at 2274.097 kb on + strand, within Echvi_1931at 2274.138 kb on + strand, within Echvi_1931at 2274.201 kb on - strand, within Echvi_1931at 2274.210 kb on + strandat 2274.366 kb on + strand, within Echvi_1931at 2274.692 kb on + strandat 2274.807 kb on + strandat 2274.969 kb on + strandat 2275.212 kb on + strand, within Echvi_1932at 2275.293 kb on + strand, within Echvi_1932at 2275.293 kb on + strand, within Echvi_1932at 2275.351 kb on - strand, within Echvi_1932at 2275.357 kb on + strand, within Echvi_1932at 2275.384 kb on - strand, within Echvi_1932at 2275.420 kb on - strand, within Echvi_1932at 2275.420 kb on - strand, within Echvi_1932

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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2,272,492 + Echvi_1929 0.62 +1.8
2,272,496 - Echvi_1929 0.64 -0.8
2,272,504 + Echvi_1929 0.69 -0.9
2,272,504 + Echvi_1929 0.69 -1.2
2,272,518 + Echvi_1929 0.77 +0.2
2,272,556 + +1.8
2,272,556 + -0.4
2,272,556 + -0.9
2,272,560 + -0.2
2,272,615 + +0.2
2,272,616 - -0.7
2,272,616 - -0.5
2,272,619 - -0.2
2,272,715 + Echvi_1930 0.15 +0.5
2,272,990 - Echvi_1930 0.75 +1.8
2,272,993 - Echvi_1930 0.76 +0.4
2,272,993 - Echvi_1930 0.76 -1.7
2,273,049 - Echvi_1930 0.88 -1.2
2,273,218 - +2.2
2,273,225 - -1.2
2,273,270 + -1.2
2,273,270 + -0.8
2,273,302 + +0.3
2,273,325 + +0.0
2,273,491 + +0.8
2,273,509 + +0.9
2,273,564 - Echvi_1931 0.11 +1.8
2,273,604 + Echvi_1931 0.15 -0.6
2,273,604 + Echvi_1931 0.15 -0.5
2,273,626 + Echvi_1931 0.17 -0.2
2,273,773 + Echvi_1931 0.31 -1.1
2,273,773 + Echvi_1931 0.31 -0.7
2,273,774 - Echvi_1931 0.31 -1.2
2,273,801 - Echvi_1931 0.34 -1.1
2,273,908 + Echvi_1931 0.44 +0.3
2,273,909 - Echvi_1931 0.44 -1.0
2,273,909 - Echvi_1931 0.44 +0.2
2,274,097 + Echvi_1931 0.61 -0.7
2,274,138 + Echvi_1931 0.65 -0.5
2,274,201 - Echvi_1931 0.71 -1.7
2,274,210 + +1.8
2,274,366 + Echvi_1931 0.87 -0.2
2,274,692 + -0.1
2,274,807 + +0.0
2,274,969 + +0.9
2,275,212 + Echvi_1932 0.16 -1.0
2,275,293 + Echvi_1932 0.21 +0.3
2,275,293 + Echvi_1932 0.21 +0.2
2,275,351 - Echvi_1932 0.24 -0.7
2,275,357 + Echvi_1932 0.24 -0.3
2,275,384 - Echvi_1932 0.26 -0.5
2,275,420 - Echvi_1932 0.28 -1.2
2,275,420 - Echvi_1932 0.28 +0.9

Or see this region's nucleotide sequence