Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0919 and Echvi_0920 are separated by 192 nucleotides Echvi_0920 and Echvi_0921 are separated by 8 nucleotides
Echvi_0919: Echvi_0919 - hypothetical protein, at 1,051,478 to 1,053,919
_0919
Echvi_0920: Echvi_0920 - hypothetical protein, at 1,054,112 to 1,054,210
_0920
Echvi_0921: Echvi_0921 - Dienelactone hydrolase and related enzymes, at 1,054,219 to 1,055,742
_0921
Position (kb)
1054
1055 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1053.127 kb on + strand, within Echvi_0919 at 1053.128 kb on - strand, within Echvi_0919 at 1053.129 kb on + strand, within Echvi_0919 at 1053.129 kb on + strand, within Echvi_0919 at 1053.129 kb on + strand, within Echvi_0919 at 1053.129 kb on + strand, within Echvi_0919 at 1053.129 kb on + strand, within Echvi_0919 at 1053.130 kb on - strand, within Echvi_0919 at 1053.159 kb on + strand, within Echvi_0919 at 1053.160 kb on - strand, within Echvi_0919 at 1053.364 kb on + strand, within Echvi_0919 at 1053.364 kb on + strand, within Echvi_0919 at 1053.365 kb on - strand, within Echvi_0919 at 1053.365 kb on - strand, within Echvi_0919 at 1053.365 kb on - strand, within Echvi_0919 at 1053.365 kb on - strand, within Echvi_0919 at 1053.365 kb on - strand, within Echvi_0919 at 1053.371 kb on - strand, within Echvi_0919 at 1053.371 kb on - strand, within Echvi_0919 at 1053.371 kb on - strand, within Echvi_0919 at 1053.445 kb on + strand, within Echvi_0919 at 1053.446 kb on - strand, within Echvi_0919 at 1053.446 kb on - strand, within Echvi_0919 at 1053.446 kb on - strand, within Echvi_0919 at 1053.447 kb on + strand, within Echvi_0919 at 1053.468 kb on + strand, within Echvi_0919 at 1053.494 kb on + strand, within Echvi_0919 at 1053.500 kb on + strand, within Echvi_0919 at 1053.501 kb on - strand, within Echvi_0919 at 1053.514 kb on - strand, within Echvi_0919 at 1053.514 kb on - strand, within Echvi_0919 at 1053.514 kb on - strand, within Echvi_0919 at 1053.549 kb on + strand, within Echvi_0919 at 1053.570 kb on + strand, within Echvi_0919 at 1053.571 kb on - strand, within Echvi_0919 at 1053.571 kb on - strand, within Echvi_0919 at 1053.571 kb on - strand, within Echvi_0919 at 1053.664 kb on - strand, within Echvi_0919 at 1053.834 kb on + strand at 1053.835 kb on - strand at 1053.876 kb on - strand at 1053.876 kb on - strand at 1053.876 kb on - strand at 1053.876 kb on - strand at 1053.877 kb on + strand at 1053.877 kb on + strand at 1053.878 kb on - strand at 1053.878 kb on - strand at 1053.878 kb on - strand at 1053.896 kb on + strand at 1053.903 kb on - strand at 1053.948 kb on - strand at 1053.948 kb on - strand at 1053.952 kb on + strand at 1053.953 kb on - strand at 1053.953 kb on - strand at 1053.953 kb on - strand at 1053.957 kb on + strand at 1053.998 kb on - strand at 1054.038 kb on + strand at 1054.038 kb on + strand at 1054.187 kb on - strand, within Echvi_0920 at 1054.187 kb on - strand, within Echvi_0920 at 1054.187 kb on - strand, within Echvi_0920 at 1054.191 kb on - strand, within Echvi_0920 at 1054.211 kb on - strand at 1054.213 kb on + strand at 1054.214 kb on - strand at 1054.220 kb on + strand at 1054.221 kb on - strand at 1054.225 kb on + strand at 1054.228 kb on + strand at 1054.233 kb on + strand at 1054.318 kb on + strand at 1054.319 kb on - strand at 1054.326 kb on + strand at 1054.327 kb on - strand at 1054.361 kb on + strand at 1054.362 kb on - strand at 1054.362 kb on - strand at 1054.366 kb on - strand at 1054.428 kb on + strand, within Echvi_0921 at 1054.428 kb on + strand, within Echvi_0921 at 1054.428 kb on + strand, within Echvi_0921 at 1054.428 kb on + strand, within Echvi_0921 at 1054.428 kb on + strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.429 kb on - strand, within Echvi_0921 at 1054.430 kb on + strand, within Echvi_0921 at 1054.430 kb on + strand, within Echvi_0921 at 1054.431 kb on - strand, within Echvi_0921 at 1054.431 kb on - strand, within Echvi_0921 at 1054.485 kb on - strand, within Echvi_0921 at 1054.506 kb on + strand, within Echvi_0921 at 1054.507 kb on - strand, within Echvi_0921 at 1054.533 kb on + strand, within Echvi_0921 at 1054.575 kb on + strand, within Echvi_0921 at 1054.606 kb on - strand, within Echvi_0921 at 1054.707 kb on + strand, within Echvi_0921 at 1054.708 kb on - strand, within Echvi_0921 at 1054.808 kb on + strand, within Echvi_0921 at 1054.858 kb on + strand, within Echvi_0921 at 1055.019 kb on + strand, within Echvi_0921 at 1055.019 kb on + strand, within Echvi_0921 at 1055.019 kb on + strand, within Echvi_0921 at 1055.020 kb on - strand, within Echvi_0921 at 1055.020 kb on - strand, within Echvi_0921 at 1055.112 kb on - strand, within Echvi_0921 at 1055.139 kb on + strand, within Echvi_0921 at 1055.139 kb on + strand, within Echvi_0921 at 1055.140 kb on - strand, within Echvi_0921 at 1055.191 kb on + strand, within Echvi_0921 at 1055.192 kb on - strand, within Echvi_0921
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 1,053,127 + Echvi_0919 0.68 -0.6 1,053,128 - Echvi_0919 0.68 -0.9 1,053,129 + Echvi_0919 0.68 +0.2 1,053,129 + Echvi_0919 0.68 +0.8 1,053,129 + Echvi_0919 0.68 +0.2 1,053,129 + Echvi_0919 0.68 -0.5 1,053,129 + Echvi_0919 0.68 -0.2 1,053,130 - Echvi_0919 0.68 -1.4 1,053,159 + Echvi_0919 0.69 -0.5 1,053,160 - Echvi_0919 0.69 -0.4 1,053,364 + Echvi_0919 0.77 +0.1 1,053,364 + Echvi_0919 0.77 -0.9 1,053,365 - Echvi_0919 0.77 -0.4 1,053,365 - Echvi_0919 0.77 -1.7 1,053,365 - Echvi_0919 0.77 -0.4 1,053,365 - Echvi_0919 0.77 -2.7 1,053,365 - Echvi_0919 0.77 +0.9 1,053,371 - Echvi_0919 0.78 -0.7 1,053,371 - Echvi_0919 0.78 +1.9 1,053,371 - Echvi_0919 0.78 +0.8 1,053,445 + Echvi_0919 0.81 -1.5 1,053,446 - Echvi_0919 0.81 -0.2 1,053,446 - Echvi_0919 0.81 -1.2 1,053,446 - Echvi_0919 0.81 -0.1 1,053,447 + Echvi_0919 0.81 +0.2 1,053,468 + Echvi_0919 0.81 +1.9 1,053,494 + Echvi_0919 0.83 +0.5 1,053,500 + Echvi_0919 0.83 -0.2 1,053,501 - Echvi_0919 0.83 -0.2 1,053,514 - Echvi_0919 0.83 -0.5 1,053,514 - Echvi_0919 0.83 +0.1 1,053,514 - Echvi_0919 0.83 +0.3 1,053,549 + Echvi_0919 0.85 +0.2 1,053,570 + Echvi_0919 0.86 +0.1 1,053,571 - Echvi_0919 0.86 -0.1 1,053,571 - Echvi_0919 0.86 -0.1 1,053,571 - Echvi_0919 0.86 +0.3 1,053,664 - Echvi_0919 0.90 +0.7 1,053,834 + -0.1 1,053,835 - -1.2 1,053,876 - -0.4 1,053,876 - +1.6 1,053,876 - +0.9 1,053,876 - -0.8 1,053,877 + +0.3 1,053,877 + -0.3 1,053,878 - +0.2 1,053,878 - -0.1 1,053,878 - -2.1 1,053,896 + +0.7 1,053,903 - -0.1 1,053,948 - -1.1 1,053,948 - -0.3 1,053,952 + -0.3 1,053,953 - -0.7 1,053,953 - +1.1 1,053,953 - +0.9 1,053,957 + +0.3 1,053,998 - -0.3 1,054,038 + +0.1 1,054,038 + +0.9 1,054,187 - Echvi_0920 0.76 -2.8 1,054,187 - Echvi_0920 0.76 -1.5 1,054,187 - Echvi_0920 0.76 +1.9 1,054,191 - Echvi_0920 0.80 -0.6 1,054,211 - +0.9 1,054,213 + +0.4 1,054,214 - +0.3 1,054,220 + -0.1 1,054,221 - +0.1 1,054,225 + +0.7 1,054,228 + +0.1 1,054,233 + +0.1 1,054,318 + -0.4 1,054,319 - -2.2 1,054,326 + -0.9 1,054,327 - +0.1 1,054,361 + +0.0 1,054,362 - -1.2 1,054,362 - -0.0 1,054,366 - +0.4 1,054,428 + Echvi_0921 0.14 -1.7 1,054,428 + Echvi_0921 0.14 -0.0 1,054,428 + Echvi_0921 0.14 -1.7 1,054,428 + Echvi_0921 0.14 +0.1 1,054,428 + Echvi_0921 0.14 +0.2 1,054,429 - Echvi_0921 0.14 -0.7 1,054,429 - Echvi_0921 0.14 -0.2 1,054,429 - Echvi_0921 0.14 -1.1 1,054,429 - Echvi_0921 0.14 -0.6 1,054,429 - Echvi_0921 0.14 -0.3 1,054,429 - Echvi_0921 0.14 -1.4 1,054,429 - Echvi_0921 0.14 +0.9 1,054,430 + Echvi_0921 0.14 -0.3 1,054,430 + Echvi_0921 0.14 -0.1 1,054,431 - Echvi_0921 0.14 -0.2 1,054,431 - Echvi_0921 0.14 -0.9 1,054,485 - Echvi_0921 0.17 -0.6 1,054,506 + Echvi_0921 0.19 -1.4 1,054,507 - Echvi_0921 0.19 -0.2 1,054,533 + Echvi_0921 0.21 -0.9 1,054,575 + Echvi_0921 0.23 -0.7 1,054,606 - Echvi_0921 0.25 +0.0 1,054,707 + Echvi_0921 0.32 -0.8 1,054,708 - Echvi_0921 0.32 -0.6 1,054,808 + Echvi_0921 0.39 -0.3 1,054,858 + Echvi_0921 0.42 +0.2 1,055,019 + Echvi_0921 0.52 -0.2 1,055,019 + Echvi_0921 0.52 +0.4 1,055,019 + Echvi_0921 0.52 -0.0 1,055,020 - Echvi_0921 0.53 +0.1 1,055,020 - Echvi_0921 0.53 -0.0 1,055,112 - Echvi_0921 0.59 +0.6 1,055,139 + Echvi_0921 0.60 -0.1 1,055,139 + Echvi_0921 0.60 +0.0 1,055,140 - Echvi_0921 0.60 -0.9 1,055,191 + Echvi_0921 0.64 +1.5 1,055,192 - Echvi_0921 0.64 -1.6
Or see this region's nucleotide sequence