Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0447

Experiment: m.b. benzoic 0.58 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0446 and Echvi_0447 are separated by 29 nucleotidesEchvi_0447 and Echvi_0448 are separated by 14 nucleotidesEchvi_0448 and Echvi_0449 are separated by 106 nucleotides Echvi_0446: Echvi_0446 - hypothetical protein, at 489,384 to 490,346 _0446 Echvi_0447: Echvi_0447 - hypothetical protein, at 490,376 to 491,695 _0447 Echvi_0448: Echvi_0448 - hypothetical protein, at 491,710 to 492,255 _0448 Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480 _0449 Position (kb) 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 489.378 kb on + strandat 489.403 kb on - strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.492 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.548 kb on + strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.582 kb on + strand, within Echvi_0446at 489.583 kb on - strand, within Echvi_0446at 489.615 kb on + strand, within Echvi_0446at 489.707 kb on - strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.709 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.745 kb on + strand, within Echvi_0446at 489.746 kb on - strand, within Echvi_0446at 489.802 kb on + strand, within Echvi_0446at 489.802 kb on + strand, within Echvi_0446at 489.803 kb on - strandat 489.808 kb on + strand, within Echvi_0446at 489.809 kb on - strand, within Echvi_0446at 489.821 kb on + strand, within Echvi_0446at 489.824 kb on + strand, within Echvi_0446at 489.825 kb on - strandat 489.825 kb on - strand, within Echvi_0446at 489.825 kb on - strand, within Echvi_0446at 489.825 kb on - strand, within Echvi_0446at 489.847 kb on + strand, within Echvi_0446at 489.847 kb on + strand, within Echvi_0446at 489.848 kb on - strand, within Echvi_0446at 489.949 kb on + strand, within Echvi_0446at 489.950 kb on - strand, within Echvi_0446at 489.954 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 490.026 kb on - strand, within Echvi_0446at 490.125 kb on - strand, within Echvi_0446at 490.127 kb on + strand, within Echvi_0446at 490.127 kb on + strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.141 kb on + strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.281 kb on + strandat 490.283 kb on + strandat 490.284 kb on - strandat 490.299 kb on + strandat 490.329 kb on - strandat 490.352 kb on + strandat 490.353 kb on - strandat 490.353 kb on - strandat 490.354 kb on + strandat 490.355 kb on - strandat 490.445 kb on + strandat 490.446 kb on - strandat 490.446 kb on - strandat 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.535 kb on + strand, within Echvi_0447at 490.563 kb on + strand, within Echvi_0447at 490.583 kb on + strand, within Echvi_0447at 490.619 kb on + strand, within Echvi_0447at 490.619 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.668 kb on + strand, within Echvi_0447at 490.769 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.800 kb on + strand, within Echvi_0447at 490.801 kb on - strand, within Echvi_0447at 490.902 kb on - strand, within Echvi_0447at 490.910 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.937 kb on - strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.962 kb on - strand, within Echvi_0447at 490.966 kb on + strand, within Echvi_0447at 491.010 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.059 kb on - strand, within Echvi_0447at 491.084 kb on - strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.101 kb on - strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.179 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.203 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.302 kb on + strand, within Echvi_0447at 491.303 kb on - strand, within Echvi_0447at 491.306 kb on - strand, within Echvi_0447at 491.343 kb on + strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447at 491.380 kb on + strand, within Echvi_0447at 491.380 kb on + strand, within Echvi_0447at 491.381 kb on - strand, within Echvi_0447at 491.473 kb on + strand, within Echvi_0447at 491.473 kb on + strand, within Echvi_0447at 491.487 kb on + strand, within Echvi_0447at 491.487 kb on + strand, within Echvi_0447at 491.488 kb on - strand, within Echvi_0447at 491.488 kb on - strand, within Echvi_0447at 491.491 kb on + strand, within Echvi_0447at 491.543 kb on - strand, within Echvi_0447at 491.543 kb on - strand, within Echvi_0447at 491.561 kb on + strand, within Echvi_0447at 491.582 kb on - strandat 491.669 kb on + strandat 491.670 kb on - strandat 491.670 kb on - strandat 491.675 kb on - strandat 491.675 kb on - strandat 491.675 kb on - strandat 491.707 kb on - strandat 491.711 kb on + strandat 491.711 kb on + strandat 491.722 kb on + strandat 491.746 kb on + strandat 491.866 kb on - strand, within Echvi_0448at 491.870 kb on - strand, within Echvi_0448at 491.870 kb on - strand, within Echvi_0448at 491.888 kb on + strand, within Echvi_0448at 491.941 kb on + strand, within Echvi_0448at 491.942 kb on - strand, within Echvi_0448at 491.942 kb on - strand, within Echvi_0448at 491.944 kb on - strand, within Echvi_0448at 492.069 kb on + strand, within Echvi_0448at 492.071 kb on + strand, within Echvi_0448at 492.072 kb on - strand, within Echvi_0448at 492.129 kb on + strand, within Echvi_0448at 492.129 kb on + strand, within Echvi_0448at 492.130 kb on - strand, within Echvi_0448at 492.137 kb on + strand, within Echvi_0448at 492.137 kb on + strand, within Echvi_0448at 492.138 kb on - strand, within Echvi_0448at 492.138 kb on - strand, within Echvi_0448at 492.303 kb on + strandat 492.322 kb on + strandat 492.334 kb on + strandat 492.343 kb on + strandat 492.358 kb on - strandat 492.358 kb on - strandat 492.395 kb on + strandat 492.396 kb on - strandat 492.603 kb on - strand, within Echvi_0449at 492.663 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
remove
489,378 + -0.1
489,403 - +0.2
489,459 + +0.0
489,459 + -0.7
489,459 + -0.2
489,460 - -0.2
489,460 - +0.8
489,460 - -0.2
489,460 - -0.1
489,460 - -0.3
489,460 - +0.9
489,460 - +0.0
489,492 + Echvi_0446 0.11 +0.2
489,494 + Echvi_0446 0.11 +0.5
489,494 + Echvi_0446 0.11 -0.5
489,548 + Echvi_0446 0.17 -1.0
489,549 - Echvi_0446 0.17 +0.6
489,549 - Echvi_0446 0.17 -0.5
489,549 - Echvi_0446 0.17 +0.3
489,549 - Echvi_0446 0.17 +0.3
489,549 - Echvi_0446 0.17 +1.2
489,549 - Echvi_0446 0.17 -0.7
489,550 + Echvi_0446 0.17 +1.4
489,550 + Echvi_0446 0.17 -0.3
489,582 + Echvi_0446 0.21 +0.1
489,583 - Echvi_0446 0.21 -0.5
489,615 + Echvi_0446 0.24 -0.9
489,707 - Echvi_0446 0.34 +0.7
489,708 + Echvi_0446 0.34 +0.2
489,708 + Echvi_0446 0.34 -0.7
489,708 + Echvi_0446 0.34 -0.0
489,709 - Echvi_0446 0.34 +0.2
489,720 - Echvi_0446 0.35 -0.4
489,720 - Echvi_0446 0.35 +1.4
489,745 + Echvi_0446 0.37 +0.8
489,746 - Echvi_0446 0.38 +0.8
489,802 + Echvi_0446 0.43 +0.1
489,802 + Echvi_0446 0.43 -0.5
489,803 - -0.5
489,808 + Echvi_0446 0.44 -0.1
489,809 - Echvi_0446 0.44 -1.4
489,821 + Echvi_0446 0.45 -1.1
489,824 + Echvi_0446 0.46 +0.2
489,825 - +0.8
489,825 - Echvi_0446 0.46 +1.8
489,825 - Echvi_0446 0.46 -0.5
489,825 - Echvi_0446 0.46 -1.2
489,847 + Echvi_0446 0.48 -0.9
489,847 + Echvi_0446 0.48 -0.2
489,848 - Echvi_0446 0.48 +0.1
489,949 + Echvi_0446 0.59 +0.2
489,950 - Echvi_0446 0.59 +0.4
489,954 + Echvi_0446 0.59 -0.8
489,960 + Echvi_0446 0.60 -0.2
489,960 + Echvi_0446 0.60 +0.0
489,960 + Echvi_0446 0.60 -0.7
489,961 - Echvi_0446 0.60 -0.5
489,961 - Echvi_0446 0.60 +0.3
489,961 - Echvi_0446 0.60 +1.6
490,026 - Echvi_0446 0.67 -0.3
490,125 - Echvi_0446 0.77 -0.7
490,127 + Echvi_0446 0.77 -0.7
490,127 + Echvi_0446 0.77 +1.3
490,128 - Echvi_0446 0.77 +1.8
490,128 - Echvi_0446 0.77 +0.7
490,128 - Echvi_0446 0.77 +0.3
490,141 + Echvi_0446 0.79 -0.2
490,200 - Echvi_0446 0.85 +0.6
490,200 - Echvi_0446 0.85 -0.7
490,200 - Echvi_0446 0.85 +0.1
490,281 + +0.2
490,283 + +0.2
490,284 - +2.4
490,299 + +0.5
490,329 - -0.1
490,352 + -0.1
490,353 - -1.8
490,353 - -0.6
490,354 + +0.5
490,355 - -1.0
490,445 + +0.3
490,446 - -0.3
490,446 - +1.5
490,518 + Echvi_0447 0.11 -1.1
490,518 + Echvi_0447 0.11 +0.4
490,518 + Echvi_0447 0.11 +0.3
490,518 + Echvi_0447 0.11 +0.2
490,518 + Echvi_0447 0.11 +0.1
490,518 + Echvi_0447 0.11 +0.3
490,518 + Echvi_0447 0.11 -0.2
490,518 + Echvi_0447 0.11 -0.3
490,519 - Echvi_0447 0.11 -1.1
490,519 - Echvi_0447 0.11 +0.3
490,519 - Echvi_0447 0.11 -0.3
490,519 - Echvi_0447 0.11 -0.2
490,520 + Echvi_0447 0.11 -0.7
490,520 + Echvi_0447 0.11 +0.0
490,520 + Echvi_0447 0.11 -1.4
490,521 - Echvi_0447 0.11 -1.5
490,521 - Echvi_0447 0.11 -1.0
490,521 - Echvi_0447 0.11 +0.2
490,535 + Echvi_0447 0.12 -0.7
490,563 + Echvi_0447 0.14 +0.8
490,583 + Echvi_0447 0.16 +0.0
490,619 + Echvi_0447 0.18 +0.4
490,619 + Echvi_0447 0.18 -0.9
490,639 + Echvi_0447 0.20 +0.7
490,639 + Echvi_0447 0.20 +1.1
490,639 + Echvi_0447 0.20 -1.4
490,640 - Echvi_0447 0.20 -0.2
490,640 - Echvi_0447 0.20 -2.0
490,640 - Echvi_0447 0.20 +0.1
490,668 + Echvi_0447 0.22 +0.9
490,769 + Echvi_0447 0.30 -0.1
490,798 + Echvi_0447 0.32 -0.4
490,798 + Echvi_0447 0.32 +0.2
490,800 + Echvi_0447 0.32 +1.1
490,801 - Echvi_0447 0.32 -0.5
490,902 - Echvi_0447 0.40 -0.7
490,910 + Echvi_0447 0.40 +0.0
490,914 + Echvi_0447 0.41 -0.4
490,914 + Echvi_0447 0.41 -0.9
490,914 + Echvi_0447 0.41 -3.0
490,914 + Echvi_0447 0.41 +0.1
490,915 - Echvi_0447 0.41 -0.2
490,915 - Echvi_0447 0.41 +0.5
490,915 - Echvi_0447 0.41 +0.3
490,915 - Echvi_0447 0.41 +0.0
490,915 - Echvi_0447 0.41 +1.8
490,937 - Echvi_0447 0.42 -1.2
490,945 + Echvi_0447 0.43 +0.2
490,945 + Echvi_0447 0.43 -0.8
490,962 - Echvi_0447 0.44 +0.9
490,966 + Echvi_0447 0.45 -1.4
491,010 + Echvi_0447 0.48 -0.8
491,026 + Echvi_0447 0.49 -1.5
491,026 + Echvi_0447 0.49 +0.4
491,026 + Echvi_0447 0.49 +1.4
491,038 + Echvi_0447 0.50 +1.2
491,038 + Echvi_0447 0.50 -1.0
491,058 + Echvi_0447 0.52 -0.0
491,058 + Echvi_0447 0.52 -0.6
491,058 + Echvi_0447 0.52 +0.8
491,058 + Echvi_0447 0.52 +0.4
491,058 + Echvi_0447 0.52 -0.3
491,059 - Echvi_0447 0.52 +0.2
491,084 - Echvi_0447 0.54 +1.2
491,088 + Echvi_0447 0.54 -0.2
491,088 + Echvi_0447 0.54 +1.9
491,089 - Echvi_0447 0.54 +3.4
491,089 - Echvi_0447 0.54 -0.8
491,100 + Echvi_0447 0.55 -1.4
491,100 + Echvi_0447 0.55 -0.9
491,101 - Echvi_0447 0.55 +0.5
491,136 + Echvi_0447 0.58 -0.5
491,136 + Echvi_0447 0.58 -1.0
491,136 + Echvi_0447 0.58 -1.5
491,136 + Echvi_0447 0.58 -0.2
491,136 + Echvi_0447 0.58 -0.9
491,137 - Echvi_0447 0.58 +0.8
491,137 - Echvi_0447 0.58 -0.9
491,137 - Echvi_0447 0.58 +0.1
491,179 + Echvi_0447 0.61 +0.7
491,202 + Echvi_0447 0.63 +0.2
491,202 + Echvi_0447 0.63 +1.0
491,202 + Echvi_0447 0.63 -0.4
491,203 - Echvi_0447 0.63 +1.0
491,266 - Echvi_0447 0.67 +0.8
491,266 - Echvi_0447 0.67 -0.7
491,269 + Echvi_0447 0.68 +0.2
491,269 + Echvi_0447 0.68 -0.4
491,302 + Echvi_0447 0.70 +0.5
491,303 - Echvi_0447 0.70 -2.4
491,306 - Echvi_0447 0.70 +1.8
491,343 + Echvi_0447 0.73 -0.2
491,344 - Echvi_0447 0.73 -0.2
491,344 - Echvi_0447 0.73 -0.8
491,380 + Echvi_0447 0.76 -0.0
491,380 + Echvi_0447 0.76 +1.8
491,381 - Echvi_0447 0.76 -0.3
491,473 + Echvi_0447 0.83 -0.0
491,473 + Echvi_0447 0.83 -0.1
491,487 + Echvi_0447 0.84 -1.1
491,487 + Echvi_0447 0.84 -0.4
491,488 - Echvi_0447 0.84 -0.1
491,488 - Echvi_0447 0.84 -1.7
491,491 + Echvi_0447 0.84 -0.1
491,543 - Echvi_0447 0.88 +0.6
491,543 - Echvi_0447 0.88 -2.6
491,561 + Echvi_0447 0.90 +0.4
491,582 - -0.7
491,669 + -1.8
491,670 - +0.4
491,670 - -0.8
491,675 - +0.2
491,675 - +0.6
491,675 - -1.5
491,707 - -1.8
491,711 + +0.4
491,711 + -0.6
491,722 + -0.8
491,746 + +0.9
491,866 - Echvi_0448 0.29 -0.3
491,870 - Echvi_0448 0.29 -1.2
491,870 - Echvi_0448 0.29 -1.3
491,888 + Echvi_0448 0.33 -0.5
491,941 + Echvi_0448 0.42 -1.3
491,942 - Echvi_0448 0.42 +0.2
491,942 - Echvi_0448 0.42 -0.1
491,944 - Echvi_0448 0.43 +0.2
492,069 + Echvi_0448 0.66 +0.3
492,071 + Echvi_0448 0.66 +1.1
492,072 - Echvi_0448 0.66 -0.7
492,129 + Echvi_0448 0.77 -0.4
492,129 + Echvi_0448 0.77 +0.3
492,130 - Echvi_0448 0.77 -0.4
492,137 + Echvi_0448 0.78 +2.1
492,137 + Echvi_0448 0.78 -0.7
492,138 - Echvi_0448 0.78 +0.2
492,138 - Echvi_0448 0.78 -0.7
492,303 + +0.7
492,322 + +0.3
492,334 + -0.5
492,343 + +0.1
492,358 - -1.4
492,358 - -1.2
492,395 + +0.7
492,396 - -0.3
492,603 - Echvi_0449 0.22 +2.2
492,663 + Echvi_0449 0.27 -0.7
492,667 + Echvi_0449 0.27 -1.3
492,667 + Echvi_0449 0.27 -0.7

Or see this region's nucleotide sequence