Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0135 and Echvi_0136 are separated by 6 nucleotides Echvi_0136 and Echvi_0137 are separated by 254 nucleotides
Echvi_0134: Echvi_0134 - hypothetical protein, at 133,769 to 134,284
_0134
Echvi_0135: Echvi_0135 - Uncharacterized protein conserved in bacteria, at 134,256 to 135,263
_0135
Echvi_0136: Echvi_0136 - Membrane-bound serine protease (ClpP class), at 135,270 to 135,728
_0136
Echvi_0137: Echvi_0137 - prolyl-tRNA synthetase, family I, at 135,983 to 137,464
_0137
Position (kb) 135
136 Strain fitness (log2 ratio) -1
0
1
2
3 at 134.279 kb on + strand at 134.279 kb on + strand at 134.279 kb on + strand at 134.279 kb on + strand at 134.279 kb on + strand at 134.280 kb on - strand at 134.280 kb on - strand at 134.356 kb on + strand at 134.359 kb on + strand, within Echvi_0135 at 134.434 kb on - strand, within Echvi_0135 at 134.514 kb on - strand, within Echvi_0135 at 134.528 kb on + strand, within Echvi_0135 at 134.556 kb on + strand, within Echvi_0135 at 134.635 kb on - strand, within Echvi_0135 at 134.635 kb on - strand, within Echvi_0135 at 134.690 kb on + strand, within Echvi_0135 at 134.859 kb on - strand, within Echvi_0135 at 134.883 kb on + strand, within Echvi_0135 at 134.883 kb on + strand, within Echvi_0135 at 134.884 kb on - strand, within Echvi_0135 at 134.951 kb on + strand, within Echvi_0135 at 134.997 kb on + strand, within Echvi_0135 at 135.087 kb on - strand, within Echvi_0135 at 135.239 kb on + strand at 135.255 kb on + strand at 135.256 kb on - strand at 135.264 kb on - strand at 135.264 kb on - strand at 135.264 kb on - strand at 135.267 kb on - strand at 135.267 kb on - strand at 135.267 kb on - strand at 135.269 kb on - strand at 135.271 kb on + strand at 135.271 kb on + strand at 135.271 kb on + strand at 135.272 kb on - strand at 135.276 kb on - strand at 135.287 kb on + strand at 135.287 kb on + strand at 135.297 kb on + strand at 135.454 kb on + strand, within Echvi_0136 at 135.454 kb on + strand, within Echvi_0136 at 135.455 kb on - strand, within Echvi_0136 at 135.464 kb on + strand, within Echvi_0136 at 135.465 kb on - strand, within Echvi_0136 at 135.498 kb on + strand, within Echvi_0136 at 135.531 kb on + strand, within Echvi_0136 at 135.531 kb on + strand, within Echvi_0136 at 135.531 kb on + strand, within Echvi_0136 at 135.532 kb on - strand, within Echvi_0136 at 135.533 kb on + strand, within Echvi_0136 at 135.541 kb on - strand, within Echvi_0136 at 135.703 kb on - strand at 135.762 kb on - strand at 135.793 kb on + strand at 135.886 kb on + strand at 135.911 kb on + strand at 135.911 kb on + strand at 135.911 kb on + strand at 135.912 kb on - strand at 135.933 kb on - strand at 135.975 kb on + strand at 135.976 kb on - strand at 135.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 134,279 + +1.0 134,279 + +0.8 134,279 + -0.2 134,279 + +0.1 134,279 + +0.4 134,280 - +0.8 134,280 - -1.2 134,356 + +2.2 134,359 + Echvi_0135 0.10 +2.0 134,434 - Echvi_0135 0.18 +0.4 134,514 - Echvi_0135 0.26 +0.5 134,528 + Echvi_0135 0.27 +0.8 134,556 + Echvi_0135 0.30 -0.3 134,635 - Echvi_0135 0.38 +0.8 134,635 - Echvi_0135 0.38 -0.4 134,690 + Echvi_0135 0.43 -0.7 134,859 - Echvi_0135 0.60 -1.2 134,883 + Echvi_0135 0.62 +1.8 134,883 + Echvi_0135 0.62 -0.5 134,884 - Echvi_0135 0.62 -0.6 134,951 + Echvi_0135 0.69 +0.8 134,997 + Echvi_0135 0.74 +0.8 135,087 - Echvi_0135 0.82 +0.1 135,239 + -0.0 135,255 + +0.5 135,256 - +0.6 135,264 - +2.4 135,264 - -0.7 135,264 - -1.1 135,267 - +0.3 135,267 - -0.2 135,267 - +3.4 135,269 - +0.6 135,271 + +0.2 135,271 + +0.6 135,271 + -0.6 135,272 - +1.2 135,276 - -1.1 135,287 + +1.4 135,287 + -0.2 135,297 + -0.6 135,454 + Echvi_0136 0.40 -1.5 135,454 + Echvi_0136 0.40 +2.4 135,455 - Echvi_0136 0.40 +0.8 135,464 + Echvi_0136 0.42 -0.5 135,465 - Echvi_0136 0.42 -1.4 135,498 + Echvi_0136 0.50 -1.0 135,531 + Echvi_0136 0.57 -0.6 135,531 + Echvi_0136 0.57 -1.0 135,531 + Echvi_0136 0.57 +0.6 135,532 - Echvi_0136 0.57 -0.2 135,533 + Echvi_0136 0.57 -1.2 135,541 - Echvi_0136 0.59 +0.7 135,703 - +0.8 135,762 - -0.3 135,793 + -0.2 135,886 + -1.0 135,911 + +0.3 135,911 + +0.8 135,911 + +0.1 135,912 - -1.6 135,933 - +2.1 135,975 + +0.2 135,976 - +0.2 135,976 - +0.8
Or see this region's nucleotide sequence