Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0111

Experiment: m.b. benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0109 and Echvi_0110 are separated by 39 nucleotidesEchvi_0110 and Echvi_0111 are separated by 59 nucleotidesEchvi_0111 and Echvi_0112 overlap by 8 nucleotidesEchvi_0112 and Echvi_0113 are separated by 77 nucleotides Echvi_0109: Echvi_0109 - FOG: WD40 repeat, at 104,240 to 105,160 _0109 Echvi_0110: Echvi_0110 - Phosphopantetheinyl transferase, at 105,200 to 105,829 _0110 Echvi_0111: Echvi_0111 - AhpC/TSA family., at 105,889 to 106,473 _0111 Echvi_0112: Echvi_0112 - Uncharacterized conserved protein, at 106,466 to 107,317 _0112 Echvi_0113: Echvi_0113 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 107,395 to 109,020 _0113 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 105.144 kb on - strandat 105.161 kb on - strandat 105.161 kb on - strandat 105.162 kb on + strandat 105.162 kb on + strandat 105.163 kb on - strandat 105.163 kb on - strandat 105.163 kb on - strandat 105.198 kb on - strandat 105.200 kb on - strandat 105.860 kb on + strandat 105.860 kb on + strandat 105.885 kb on + strandat 105.885 kb on + strandat 105.885 kb on + strandat 105.905 kb on + strandat 105.905 kb on + strandat 105.906 kb on - strandat 105.924 kb on - strandat 106.054 kb on - strand, within Echvi_0111at 106.174 kb on - strand, within Echvi_0111at 106.223 kb on - strand, within Echvi_0111at 106.242 kb on + strand, within Echvi_0111at 106.325 kb on - strand, within Echvi_0111at 106.325 kb on - strand, within Echvi_0111at 106.345 kb on - strand, within Echvi_0111at 106.378 kb on + strand, within Echvi_0111at 106.378 kb on + strand, within Echvi_0111at 106.382 kb on + strand, within Echvi_0111at 106.382 kb on + strand, within Echvi_0111at 106.382 kb on + strand, within Echvi_0111at 106.383 kb on - strand, within Echvi_0111at 106.383 kb on - strand, within Echvi_0111at 106.383 kb on - strand, within Echvi_0111at 106.404 kb on - strand, within Echvi_0111at 106.455 kb on + strandat 106.532 kb on + strandat 106.532 kb on + strandat 106.577 kb on + strand, within Echvi_0112at 106.592 kb on - strand, within Echvi_0112at 106.649 kb on + strand, within Echvi_0112at 106.650 kb on - strand, within Echvi_0112at 106.650 kb on - strand, within Echvi_0112at 106.663 kb on + strand, within Echvi_0112at 106.678 kb on + strand, within Echvi_0112at 106.678 kb on + strand, within Echvi_0112at 106.679 kb on - strand, within Echvi_0112at 106.681 kb on + strand, within Echvi_0112at 106.690 kb on + strand, within Echvi_0112at 106.693 kb on + strand, within Echvi_0112at 106.719 kb on + strand, within Echvi_0112at 106.720 kb on - strand, within Echvi_0112at 106.734 kb on - strand, within Echvi_0112at 106.734 kb on - strand, within Echvi_0112at 106.755 kb on + strand, within Echvi_0112at 106.907 kb on + strand, within Echvi_0112at 106.907 kb on + strand, within Echvi_0112at 106.908 kb on - strand, within Echvi_0112at 106.908 kb on - strand, within Echvi_0112at 106.908 kb on - strand, within Echvi_0112at 106.910 kb on + strand, within Echvi_0112at 106.910 kb on + strand, within Echvi_0112at 106.911 kb on - strand, within Echvi_0112at 106.911 kb on - strand, within Echvi_0112at 106.938 kb on + strand, within Echvi_0112at 106.939 kb on - strand, within Echvi_0112at 106.981 kb on - strand, within Echvi_0112at 107.034 kb on + strand, within Echvi_0112at 107.035 kb on - strand, within Echvi_0112at 107.035 kb on - strand, within Echvi_0112at 107.035 kb on - strand, within Echvi_0112at 107.035 kb on - strand, within Echvi_0112at 107.038 kb on + strand, within Echvi_0112at 107.157 kb on - strand, within Echvi_0112at 107.167 kb on + strand, within Echvi_0112at 107.168 kb on - strand, within Echvi_0112at 107.332 kb on + strandat 107.333 kb on - strandat 107.333 kb on - strandat 107.333 kb on - strandat 107.367 kb on + strandat 107.375 kb on + strandat 107.376 kb on - strandat 107.376 kb on - strandat 107.376 kb on - strandat 107.376 kb on - strandat 107.377 kb on + strandat 107.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml
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105,144 - +1.8
105,161 - -0.4
105,161 - +1.8
105,162 + +0.6
105,162 + -0.3
105,163 - -0.7
105,163 - -0.2
105,163 - -0.0
105,198 - -0.0
105,200 - -0.6
105,860 + -1.6
105,860 + +1.0
105,885 + +1.3
105,885 + +1.3
105,885 + +1.4
105,905 + +1.8
105,905 + -0.6
105,906 - +0.2
105,924 - -0.8
106,054 - Echvi_0111 0.28 +0.0
106,174 - Echvi_0111 0.49 -2.0
106,223 - Echvi_0111 0.57 -0.4
106,242 + Echvi_0111 0.60 +0.0
106,325 - Echvi_0111 0.75 +0.4
106,325 - Echvi_0111 0.75 -0.7
106,345 - Echvi_0111 0.78 -1.2
106,378 + Echvi_0111 0.84 -0.9
106,378 + Echvi_0111 0.84 +0.3
106,382 + Echvi_0111 0.84 -0.7
106,382 + Echvi_0111 0.84 +0.0
106,382 + Echvi_0111 0.84 -0.2
106,383 - Echvi_0111 0.84 +0.4
106,383 - Echvi_0111 0.84 -0.6
106,383 - Echvi_0111 0.84 -0.5
106,404 - Echvi_0111 0.88 -1.8
106,455 + +0.7
106,532 + -1.5
106,532 + -0.1
106,577 + Echvi_0112 0.13 -0.9
106,592 - Echvi_0112 0.15 +0.5
106,649 + Echvi_0112 0.21 -0.5
106,650 - Echvi_0112 0.22 +0.4
106,650 - Echvi_0112 0.22 -2.3
106,663 + Echvi_0112 0.23 +0.8
106,678 + Echvi_0112 0.25 +0.6
106,678 + Echvi_0112 0.25 -0.3
106,679 - Echvi_0112 0.25 -0.2
106,681 + Echvi_0112 0.25 -0.5
106,690 + Echvi_0112 0.26 +1.0
106,693 + Echvi_0112 0.27 -0.3
106,719 + Echvi_0112 0.30 -0.0
106,720 - Echvi_0112 0.30 +0.2
106,734 - Echvi_0112 0.31 +1.0
106,734 - Echvi_0112 0.31 -0.5
106,755 + Echvi_0112 0.34 -0.5
106,907 + Echvi_0112 0.52 -1.0
106,907 + Echvi_0112 0.52 +0.4
106,908 - Echvi_0112 0.52 -1.3
106,908 - Echvi_0112 0.52 -0.0
106,908 - Echvi_0112 0.52 +0.2
106,910 + Echvi_0112 0.52 -0.1
106,910 + Echvi_0112 0.52 -0.8
106,911 - Echvi_0112 0.52 -0.8
106,911 - Echvi_0112 0.52 -0.1
106,938 + Echvi_0112 0.55 -0.4
106,939 - Echvi_0112 0.56 +0.2
106,981 - Echvi_0112 0.60 -1.9
107,034 + Echvi_0112 0.67 -1.7
107,035 - Echvi_0112 0.67 -0.3
107,035 - Echvi_0112 0.67 +0.8
107,035 - Echvi_0112 0.67 +0.3
107,035 - Echvi_0112 0.67 -0.1
107,038 + Echvi_0112 0.67 -0.2
107,157 - Echvi_0112 0.81 +0.0
107,167 + Echvi_0112 0.82 +0.8
107,168 - Echvi_0112 0.82 -0.7
107,332 + +0.1
107,333 - -0.2
107,333 - +2.1
107,333 - -0.6
107,367 + +1.6
107,375 + -0.1
107,376 - -0.0
107,376 - +0.3
107,376 - -2.0
107,376 - -0.2
107,377 + +0.6
107,413 + -0.2

Or see this region's nucleotide sequence