Experiment: m.b. benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0109 and Echvi_0110 are separated by 39 nucleotides Echvi_0110 and Echvi_0111 are separated by 59 nucleotides Echvi_0111 and Echvi_0112 overlap by 8 nucleotides Echvi_0112 and Echvi_0113 are separated by 77 nucleotides
Echvi_0109: Echvi_0109 - FOG: WD40 repeat, at 104,240 to 105,160
_0109
Echvi_0110: Echvi_0110 - Phosphopantetheinyl transferase, at 105,200 to 105,829
_0110
Echvi_0111: Echvi_0111 - AhpC/TSA family., at 105,889 to 106,473
_0111
Echvi_0112: Echvi_0112 - Uncharacterized conserved protein, at 106,466 to 107,317
_0112
Echvi_0113: Echvi_0113 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 107,395 to 109,020
_0113
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 105.144 kb on - strand at 105.161 kb on - strand at 105.161 kb on - strand at 105.162 kb on + strand at 105.162 kb on + strand at 105.163 kb on - strand at 105.163 kb on - strand at 105.163 kb on - strand at 105.198 kb on - strand at 105.200 kb on - strand at 105.860 kb on + strand at 105.860 kb on + strand at 105.885 kb on + strand at 105.885 kb on + strand at 105.885 kb on + strand at 105.905 kb on + strand at 105.905 kb on + strand at 105.906 kb on - strand at 105.924 kb on - strand at 106.054 kb on - strand, within Echvi_0111 at 106.174 kb on - strand, within Echvi_0111 at 106.223 kb on - strand, within Echvi_0111 at 106.242 kb on + strand, within Echvi_0111 at 106.325 kb on - strand, within Echvi_0111 at 106.325 kb on - strand, within Echvi_0111 at 106.345 kb on - strand, within Echvi_0111 at 106.378 kb on + strand, within Echvi_0111 at 106.378 kb on + strand, within Echvi_0111 at 106.382 kb on + strand, within Echvi_0111 at 106.382 kb on + strand, within Echvi_0111 at 106.382 kb on + strand, within Echvi_0111 at 106.383 kb on - strand, within Echvi_0111 at 106.383 kb on - strand, within Echvi_0111 at 106.383 kb on - strand, within Echvi_0111 at 106.404 kb on - strand, within Echvi_0111 at 106.455 kb on + strand at 106.532 kb on + strand at 106.532 kb on + strand at 106.577 kb on + strand, within Echvi_0112 at 106.592 kb on - strand, within Echvi_0112 at 106.649 kb on + strand, within Echvi_0112 at 106.650 kb on - strand, within Echvi_0112 at 106.650 kb on - strand, within Echvi_0112 at 106.663 kb on + strand, within Echvi_0112 at 106.678 kb on + strand, within Echvi_0112 at 106.678 kb on + strand, within Echvi_0112 at 106.679 kb on - strand, within Echvi_0112 at 106.681 kb on + strand, within Echvi_0112 at 106.690 kb on + strand, within Echvi_0112 at 106.693 kb on + strand, within Echvi_0112 at 106.719 kb on + strand, within Echvi_0112 at 106.720 kb on - strand, within Echvi_0112 at 106.734 kb on - strand, within Echvi_0112 at 106.734 kb on - strand, within Echvi_0112 at 106.755 kb on + strand, within Echvi_0112 at 106.907 kb on + strand, within Echvi_0112 at 106.907 kb on + strand, within Echvi_0112 at 106.908 kb on - strand, within Echvi_0112 at 106.908 kb on - strand, within Echvi_0112 at 106.908 kb on - strand, within Echvi_0112 at 106.910 kb on + strand, within Echvi_0112 at 106.910 kb on + strand, within Echvi_0112 at 106.911 kb on - strand, within Echvi_0112 at 106.911 kb on - strand, within Echvi_0112 at 106.938 kb on + strand, within Echvi_0112 at 106.939 kb on - strand, within Echvi_0112 at 106.981 kb on - strand, within Echvi_0112 at 107.034 kb on + strand, within Echvi_0112 at 107.035 kb on - strand, within Echvi_0112 at 107.035 kb on - strand, within Echvi_0112 at 107.035 kb on - strand, within Echvi_0112 at 107.035 kb on - strand, within Echvi_0112 at 107.038 kb on + strand, within Echvi_0112 at 107.157 kb on - strand, within Echvi_0112 at 107.167 kb on + strand, within Echvi_0112 at 107.168 kb on - strand, within Echvi_0112 at 107.332 kb on + strand at 107.333 kb on - strand at 107.333 kb on - strand at 107.333 kb on - strand at 107.367 kb on + strand at 107.375 kb on + strand at 107.376 kb on - strand at 107.376 kb on - strand at 107.376 kb on - strand at 107.376 kb on - strand at 107.377 kb on + strand at 107.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.58 mg/ml remove 105,144 - +1.8 105,161 - -0.4 105,161 - +1.8 105,162 + +0.6 105,162 + -0.3 105,163 - -0.7 105,163 - -0.2 105,163 - -0.0 105,198 - -0.0 105,200 - -0.6 105,860 + -1.6 105,860 + +1.0 105,885 + +1.3 105,885 + +1.3 105,885 + +1.4 105,905 + +1.8 105,905 + -0.6 105,906 - +0.2 105,924 - -0.8 106,054 - Echvi_0111 0.28 +0.0 106,174 - Echvi_0111 0.49 -2.0 106,223 - Echvi_0111 0.57 -0.4 106,242 + Echvi_0111 0.60 +0.0 106,325 - Echvi_0111 0.75 +0.4 106,325 - Echvi_0111 0.75 -0.7 106,345 - Echvi_0111 0.78 -1.2 106,378 + Echvi_0111 0.84 -0.9 106,378 + Echvi_0111 0.84 +0.3 106,382 + Echvi_0111 0.84 -0.7 106,382 + Echvi_0111 0.84 +0.0 106,382 + Echvi_0111 0.84 -0.2 106,383 - Echvi_0111 0.84 +0.4 106,383 - Echvi_0111 0.84 -0.6 106,383 - Echvi_0111 0.84 -0.5 106,404 - Echvi_0111 0.88 -1.8 106,455 + +0.7 106,532 + -1.5 106,532 + -0.1 106,577 + Echvi_0112 0.13 -0.9 106,592 - Echvi_0112 0.15 +0.5 106,649 + Echvi_0112 0.21 -0.5 106,650 - Echvi_0112 0.22 +0.4 106,650 - Echvi_0112 0.22 -2.3 106,663 + Echvi_0112 0.23 +0.8 106,678 + Echvi_0112 0.25 +0.6 106,678 + Echvi_0112 0.25 -0.3 106,679 - Echvi_0112 0.25 -0.2 106,681 + Echvi_0112 0.25 -0.5 106,690 + Echvi_0112 0.26 +1.0 106,693 + Echvi_0112 0.27 -0.3 106,719 + Echvi_0112 0.30 -0.0 106,720 - Echvi_0112 0.30 +0.2 106,734 - Echvi_0112 0.31 +1.0 106,734 - Echvi_0112 0.31 -0.5 106,755 + Echvi_0112 0.34 -0.5 106,907 + Echvi_0112 0.52 -1.0 106,907 + Echvi_0112 0.52 +0.4 106,908 - Echvi_0112 0.52 -1.3 106,908 - Echvi_0112 0.52 -0.0 106,908 - Echvi_0112 0.52 +0.2 106,910 + Echvi_0112 0.52 -0.1 106,910 + Echvi_0112 0.52 -0.8 106,911 - Echvi_0112 0.52 -0.8 106,911 - Echvi_0112 0.52 -0.1 106,938 + Echvi_0112 0.55 -0.4 106,939 - Echvi_0112 0.56 +0.2 106,981 - Echvi_0112 0.60 -1.9 107,034 + Echvi_0112 0.67 -1.7 107,035 - Echvi_0112 0.67 -0.3 107,035 - Echvi_0112 0.67 +0.8 107,035 - Echvi_0112 0.67 +0.3 107,035 - Echvi_0112 0.67 -0.1 107,038 + Echvi_0112 0.67 -0.2 107,157 - Echvi_0112 0.81 +0.0 107,167 + Echvi_0112 0.82 +0.8 107,168 - Echvi_0112 0.82 -0.7 107,332 + +0.1 107,333 - -0.2 107,333 - +2.1 107,333 - -0.6 107,367 + +1.6 107,375 + -0.1 107,376 - -0.0 107,376 - +0.3 107,376 - -2.0 107,376 - -0.2 107,377 + +0.6 107,413 + -0.2
Or see this region's nucleotide sequence