Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02125 and AMB_RS23865 are separated by 244 nucleotides AMB_RS23865 and AMB_RS23870 are separated by 202 nucleotides
AMB_RS02125: AMB_RS02125 - LemA family protein, at 446,429 to 447,079
_RS02125
AMB_RS23865: AMB_RS23865 - DUF2786 domain-containing protein, at 447,324 to 448,025
_RS23865
AMB_RS23870: AMB_RS23870 - ParA family protein, at 448,228 to 448,884
_RS23870
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 446.350 kb on + strand at 446.351 kb on - strand at 446.398 kb on - strand at 446.435 kb on - strand at 446.502 kb on + strand, within AMB_RS02125 at 446.710 kb on - strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 447.030 kb on - strand at 447.088 kb on - strand at 447.088 kb on - strand at 447.088 kb on - strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.187 kb on + strand at 447.278 kb on - strand at 447.395 kb on + strand, within AMB_RS23865 at 447.620 kb on - strand, within AMB_RS23865 at 447.657 kb on + strand, within AMB_RS23865 at 447.853 kb on + strand, within AMB_RS23865 at 448.024 kb on - strand at 448.046 kb on + strand at 448.073 kb on + strand at 448.073 kb on + strand at 448.088 kb on + strand at 448.089 kb on - strand at 448.092 kb on + strand at 448.093 kb on - strand at 448.096 kb on + strand at 448.096 kb on + strand at 448.145 kb on + strand at 448.145 kb on + strand at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.335 kb on - strand, within AMB_RS23870 at 448.465 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.485 kb on + strand, within AMB_RS23870 at 448.508 kb on + strand, within AMB_RS23870 at 448.526 kb on - strand, within AMB_RS23870 at 448.545 kb on - strand, within AMB_RS23870 at 448.545 kb on - strand, within AMB_RS23870 at 448.557 kb on - strand, within AMB_RS23870 at 448.557 kb on - strand, within AMB_RS23870 at 448.629 kb on + strand, within AMB_RS23870 at 448.641 kb on - strand, within AMB_RS23870 at 448.641 kb on - strand, within AMB_RS23870 at 448.709 kb on + strand, within AMB_RS23870 at 448.709 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.729 kb on + strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.730 kb on - strand, within AMB_RS23870 at 448.760 kb on - strand, within AMB_RS23870 at 448.760 kb on - strand, within AMB_RS23870 at 448.773 kb on + strand, within AMB_RS23870 at 448.851 kb on + strand at 448.854 kb on + strand at 448.855 kb on - strand at 448.862 kb on + strand at 448.862 kb on + strand at 448.862 kb on + strand at 448.863 kb on - strand at 448.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 446,350 + -1.8 446,351 - -2.0 446,398 - -1.6 446,435 - -0.6 446,502 + AMB_RS02125 0.11 +1.7 446,710 - AMB_RS02125 0.43 -1.0 446,815 + AMB_RS02125 0.59 +0.5 446,815 + AMB_RS02125 0.59 +0.5 447,030 - -1.8 447,088 - -1.2 447,088 - -1.5 447,088 - -2.4 447,176 + -1.0 447,176 + -0.6 447,176 + -0.6 447,176 + -2.5 447,177 - -0.3 447,177 - +0.1 447,177 - +0.7 447,177 - -1.9 447,177 - -1.8 447,177 - -0.2 447,187 + +0.1 447,278 - -1.0 447,395 + AMB_RS23865 0.10 -1.6 447,620 - AMB_RS23865 0.42 -0.8 447,657 + AMB_RS23865 0.47 -2.8 447,853 + AMB_RS23865 0.75 -1.3 448,024 - -1.2 448,046 + -0.9 448,073 + -0.4 448,073 + -0.6 448,088 + -1.2 448,089 - +0.9 448,092 + -1.6 448,093 - -1.0 448,096 + -0.3 448,096 + -1.3 448,145 + -2.4 448,145 + +0.1 448,335 - AMB_RS23870 0.16 -1.5 448,335 - AMB_RS23870 0.16 +0.6 448,335 - AMB_RS23870 0.16 -1.6 448,335 - AMB_RS23870 0.16 -0.6 448,465 + AMB_RS23870 0.36 +0.4 448,485 + AMB_RS23870 0.39 +0.7 448,485 + AMB_RS23870 0.39 -0.3 448,485 + AMB_RS23870 0.39 +0.8 448,485 + AMB_RS23870 0.39 -0.4 448,508 + AMB_RS23870 0.43 -0.0 448,526 - AMB_RS23870 0.45 +0.4 448,545 - AMB_RS23870 0.48 -0.3 448,545 - AMB_RS23870 0.48 +0.1 448,557 - AMB_RS23870 0.50 -1.1 448,557 - AMB_RS23870 0.50 -0.1 448,629 + AMB_RS23870 0.61 +0.5 448,641 - AMB_RS23870 0.63 +0.7 448,641 - AMB_RS23870 0.63 -0.8 448,709 + AMB_RS23870 0.73 -0.0 448,709 + AMB_RS23870 0.73 -3.3 448,729 + AMB_RS23870 0.76 -1.5 448,729 + AMB_RS23870 0.76 -2.1 448,729 + AMB_RS23870 0.76 -0.6 448,729 + AMB_RS23870 0.76 -0.3 448,730 - AMB_RS23870 0.76 -1.3 448,730 - AMB_RS23870 0.76 -1.5 448,730 - AMB_RS23870 0.76 -0.9 448,760 - AMB_RS23870 0.81 -0.3 448,760 - AMB_RS23870 0.81 +0.2 448,773 + AMB_RS23870 0.83 -1.5 448,851 + -2.1 448,854 + +1.7 448,855 - -1.3 448,862 + -0.2 448,862 + -1.3 448,862 + +0.2 448,863 - +1.7 448,867 - +0.1
Or see this region's nucleotide sequence