Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22790

Experiment: 30_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS22780 and AMB_RS22785 overlap by 4 nucleotidesAMB_RS22785 and AMB_RS22790 are separated by 101 nucleotidesAMB_RS22790 and AMB_RS22795 overlap by 1 nucleotidesAMB_RS22795 and AMB_RS22800 are separated by 29 nucleotides AMB_RS22780: AMB_RS22780 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 4,916,963 to 4,917,937 _RS22780 AMB_RS22785: AMB_RS22785 - YraN family protein, at 4,917,934 to 4,918,323 _RS22785 AMB_RS22790: AMB_RS22790 - BON domain-containing protein, at 4,918,425 to 4,918,988 _RS22790 AMB_RS22795: AMB_RS22795 - hypothetical protein, at 4,918,988 to 4,919,836 _RS22795 AMB_RS22800: AMB_RS22800 - glutathione synthase, at 4,919,866 to 4,920,810 _RS22800 Position (kb) 4918 4919Strain fitness (log2 ratio) -1 0 1at 4918.321 kb on + strandat 4918.321 kb on + strandat 4919.132 kb on + strand, within AMB_RS22795at 4919.222 kb on + strand, within AMB_RS22795at 4919.222 kb on + strand, within AMB_RS22795at 4919.853 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
remove
4,918,321 + +0.5
4,918,321 + -0.2
4,919,132 + AMB_RS22795 0.17 -0.4
4,919,222 + AMB_RS22795 0.28 -0.5
4,919,222 + AMB_RS22795 0.28 -1.4
4,919,853 + -1.1

Or see this region's nucleotide sequence