Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20970

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
4,550,104	+		AMB_RS20960	0.52	-0.4
4,550,104	+		AMB_RS20960	0.52	-0.7
4,550,104	+		AMB_RS20960	0.52	-0.2
4,550,104	+		AMB_RS20960	0.52	-1.7
4,550,104	+		AMB_RS20960	0.52	+1.7
4,550,104	+		AMB_RS20960	0.52	+0.1
4,550,104	+		AMB_RS20960	0.52	-0.4
4,550,104	+		AMB_RS20960	0.52	-0.7
4,550,104	+		AMB_RS20960	0.52	+0.7
4,550,104	+		AMB_RS20960	0.52	-0.9
4,550,104	+		AMB_RS20960	0.52	+0.0
4,550,105	-		AMB_RS20960	0.52	-0.7
4,550,105	-		AMB_RS20960	0.52	-0.6
4,550,105	-		AMB_RS20960	0.52	-1.9
4,550,105	-		AMB_RS20960	0.52	+0.2
4,550,105	-		AMB_RS20960	0.52	-2.0
4,550,105	-		AMB_RS20960	0.52	-0.4
4,550,105	-		AMB_RS20960	0.52	-0.7
4,550,105	-		AMB_RS20960	0.52	+0.5
4,550,105	-		AMB_RS20960	0.52	+0.1
4,550,105	-		AMB_RS20960	0.52	+4.4
4,550,107	+		AMB_RS20960	0.52	+0.1
4,550,107	+		AMB_RS20960	0.52	-0.3
4,550,107	+		AMB_RS20960	0.52	+0.7
4,550,107	+		AMB_RS20960	0.52	-1.7
4,550,108	-		AMB_RS20960	0.53	-2.0
4,550,108	-		AMB_RS20960	0.53	-1.5
4,550,123	+		AMB_RS20960	0.54	-0.6
4,550,236	+		AMB_RS20960	0.64	-0.6
4,550,335	+		AMB_RS20960	0.72	-0.9
4,550,335	+		AMB_RS20960	0.72	-0.2
4,550,335	+		AMB_RS20960	0.72	-0.1
4,550,335	+		AMB_RS20960	0.72	+0.5
4,550,335	+		AMB_RS20960	0.72	-0.1
4,550,335	+		AMB_RS20960	0.72	-1.5
4,550,335	+		AMB_RS20960	0.72	-0.8
4,550,336	-		AMB_RS20960	0.72	+0.7
4,550,336	-		AMB_RS20960	0.72	-0.7
4,550,336	-		AMB_RS20960	0.72	+0.1
4,550,336	-		AMB_RS20960	0.72	-0.7
4,550,336	-		AMB_RS20960	0.72	-0.3
4,550,564	-				+0.2
4,550,873	+		AMB_RS20965	0.47	-1.9
4,550,873	+		AMB_RS20965	0.47	-0.7
4,550,874	-		AMB_RS20965	0.47	-0.5
4,550,874	-		AMB_RS20965	0.47	+0.3
4,550,874	-		AMB_RS20965	0.47	-3.7
4,550,975	+		AMB_RS20965	0.72	-1.5
4,550,976	-		AMB_RS20965	0.72	-0.6
4,550,976	-		AMB_RS20965	0.72	-1.6
4,550,976	-		AMB_RS20965	0.72	-2.7
4,550,976	-		AMB_RS20965	0.72	+0.8
4,550,976	-		AMB_RS20965	0.72	+1.1
4,551,251	+				-1.8
4,551,391	+				+0.3
4,551,391	+				+0.6
4,551,391	+				-1.7
4,551,391	+				+0.1
4,551,391	+				+0.4
4,551,392	-				-0.5
4,551,392	-				-0.6
4,551,392	-				-0.4
4,551,557	-		AMB_RS20970	0.12	-2.9
4,551,557	-		AMB_RS20970	0.12	+1.0
4,551,737	+		AMB_RS20970	0.17	-0.8
4,551,737	+		AMB_RS20970	0.17	-1.5
4,551,738	-		AMB_RS20970	0.17	-1.3
4,552,468	+		AMB_RS20970	0.37	+0.0
4,552,469	-		AMB_RS20970	0.37	+0.3
4,552,469	-		AMB_RS20970	0.37	-1.3
4,552,657	+		AMB_RS20970	0.42	-0.0
4,552,657	+		AMB_RS20970	0.42	-0.6
4,552,657	+		AMB_RS20970	0.42	-0.1
4,552,658	-		AMB_RS20970	0.42	+0.1
4,552,658	-		AMB_RS20970	0.42	-0.9
4,552,913	+		AMB_RS20970	0.48	-1.3
4,552,915	+		AMB_RS20970	0.48	-0.5
4,552,915	+		AMB_RS20970	0.48	+0.7
4,552,915	+		AMB_RS20970	0.48	-0.2
4,552,915	+		AMB_RS20970	0.48	+0.1
4,552,915	+		AMB_RS20970	0.48	-2.6
4,552,915	+		AMB_RS20970	0.48	-0.1
4,553,006	+		AMB_RS20970	0.51	-1.2
4,553,006	+		AMB_RS20970	0.51	-0.4
4,553,006	+		AMB_RS20970	0.51	-2.4
4,553,006	+		AMB_RS20970	0.51	-2.6
4,553,161	+		AMB_RS20970	0.55	+0.1
4,553,161	+		AMB_RS20970	0.55	-0.9
4,553,161	+		AMB_RS20970	0.55	-3.0
4,553,162	-		AMB_RS20970	0.55	-0.7
4,553,162	-		AMB_RS20970	0.55	-0.7
4,553,162	-		AMB_RS20970	0.55	+0.7
4,553,199	+		AMB_RS20970	0.56	-0.6
4,553,199	+		AMB_RS20970	0.56	-2.5
4,553,287	+		AMB_RS20970	0.58	+0.0
4,553,287	+		AMB_RS20970	0.58	-0.3
4,553,288	-		AMB_RS20970	0.58	-0.0
4,553,288	-		AMB_RS20970	0.58	-1.2
4,553,341	+		AMB_RS20970	0.60	-0.5
4,553,703	+		AMB_RS20970	0.69	+0.4
4,553,764	+		AMB_RS20970	0.71	+0.1
4,553,764	+		AMB_RS20970	0.71	-0.1
4,553,764	+		AMB_RS20970	0.71	-1.3
4,553,764	+		AMB_RS20970	0.71	-2.8
4,553,765	-		AMB_RS20970	0.71	-0.7
4,553,765	-		AMB_RS20970	0.71	+1.7
4,553,765	-		AMB_RS20970	0.71	+0.7
4,553,878	+		AMB_RS20970	0.74	-2.3
4,553,923	+		AMB_RS20970	0.75	-0.9
4,553,923	+		AMB_RS20970	0.75	-2.3
4,553,923	+		AMB_RS20970	0.75	+0.5
4,553,923	+		AMB_RS20970	0.75	+0.1
4,553,923	+		AMB_RS20970	0.75	-1.9
4,553,923	+		AMB_RS20970	0.75	+0.1
4,553,923	+		AMB_RS20970	0.75	-1.0
4,553,923	+		AMB_RS20970	0.75	-0.7
4,553,923	+		AMB_RS20970	0.75	+0.1
4,553,923	+		AMB_RS20970	0.75	-1.2
4,553,923	+		AMB_RS20970	0.75	-0.3
4,553,923	+		AMB_RS20970	0.75	+0.1
4,553,924	-		AMB_RS20970	0.75	-0.9
4,553,924	-		AMB_RS20970	0.75	-2.5
4,553,924	-		AMB_RS20970	0.75	-1.9
4,553,924	-		AMB_RS20970	0.75	+0.1
4,553,924	-		AMB_RS20970	0.75	-0.1
4,554,295	+		AMB_RS20970	0.85	+0.7
4,554,295	+		AMB_RS20970	0.85	+1.7
4,554,296	-		AMB_RS20970	0.85	+0.1
4,554,715	+				+0.3
4,554,715	+				+0.3
4,554,715	+				-2.0
4,554,715	+				-1.9
4,554,715	+				-0.4
4,554,716	-				-1.5
4,554,716	-				-1.3
4,554,716	-				+0.1
4,554,763	+				-2.6
4,554,764	-				-0.1
4,554,764	-				-2.0
4,554,764	-				+0.9
4,555,245	+		AMB_RS20975	0.25	-0.9
4,555,246	-		AMB_RS20975	0.25	+0.1
4,555,249	+		AMB_RS20975	0.25	-1.2
4,555,249	+		AMB_RS20975	0.25	-0.3
4,555,249	+		AMB_RS20975	0.25	-0.9
4,555,249	+		AMB_RS20975	0.25	-0.3
4,555,249	+		AMB_RS20975	0.25	-0.6
4,555,250	-		AMB_RS20975	0.25	-0.9
4,555,250	-		AMB_RS20975	0.25	-1.5
4,555,395	+		AMB_RS20975	0.34	-0.3
4,555,396	-		AMB_RS20975	0.34	-0.0
4,555,396	-		AMB_RS20975	0.34	+0.1
4,555,569	+		AMB_RS20975	0.45	-0.0
4,555,570	-		AMB_RS20975	0.45	+0.7
4,555,570	-		AMB_RS20975	0.45	-0.3
4,555,570	-		AMB_RS20975	0.45	-1.2