Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20170 and AMB_RS20175 are separated by 5 nucleotides AMB_RS20175 and AMB_RS20180 are separated by 90 nucleotides AMB_RS20180 and AMB_RS20185 are separated by 146 nucleotides
AMB_RS20170: AMB_RS20170 - hypothetical protein, at 4,396,628 to 4,397,254
_RS20170
AMB_RS20175: AMB_RS20175 - lysozyme, at 4,397,260 to 4,397,715
_RS20175
AMB_RS20180: AMB_RS20180 - hypothetical protein, at 4,397,806 to 4,398,114
_RS20180
AMB_RS20185: AMB_RS20185 - site-specific DNA-methyltransferase, at 4,398,261 to 4,399,337
_RS20185
Position (kb) 4397
4398
4399 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4397.102 kb on + strand, within AMB_RS20170 at 4397.103 kb on - strand, within AMB_RS20170 at 4397.103 kb on - strand, within AMB_RS20170 at 4397.103 kb on - strand, within AMB_RS20170 at 4397.103 kb on - strand, within AMB_RS20170 at 4397.171 kb on - strand, within AMB_RS20170 at 4397.252 kb on + strand at 4397.252 kb on + strand at 4397.252 kb on + strand at 4397.253 kb on - strand at 4397.253 kb on - strand at 4397.253 kb on - strand at 4397.387 kb on + strand, within AMB_RS20175 at 4397.388 kb on - strand, within AMB_RS20175 at 4397.388 kb on - strand, within AMB_RS20175 at 4397.388 kb on - strand, within AMB_RS20175 at 4397.474 kb on + strand, within AMB_RS20175 at 4397.474 kb on + strand, within AMB_RS20175 at 4397.475 kb on - strand, within AMB_RS20175 at 4397.475 kb on - strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.645 kb on + strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.646 kb on - strand, within AMB_RS20175 at 4397.791 kb on + strand at 4397.791 kb on + strand at 4397.791 kb on + strand at 4397.985 kb on - strand, within AMB_RS20180 at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.118 kb on + strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.119 kb on - strand at 4398.120 kb on + strand at 4398.341 kb on - strand at 4398.749 kb on - strand, within AMB_RS20185 at 4398.883 kb on + strand, within AMB_RS20185
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 4,397,102 + AMB_RS20170 0.76 -2.8 4,397,103 - AMB_RS20170 0.76 -1.0 4,397,103 - AMB_RS20170 0.76 -0.6 4,397,103 - AMB_RS20170 0.76 -1.4 4,397,103 - AMB_RS20170 0.76 -0.1 4,397,171 - AMB_RS20170 0.87 -0.0 4,397,252 + -0.0 4,397,252 + +0.0 4,397,252 + -0.7 4,397,253 - -1.2 4,397,253 - -0.1 4,397,253 - +0.3 4,397,387 + AMB_RS20175 0.28 +0.0 4,397,388 - AMB_RS20175 0.28 +1.6 4,397,388 - AMB_RS20175 0.28 -0.2 4,397,388 - AMB_RS20175 0.28 +1.6 4,397,474 + AMB_RS20175 0.47 +0.7 4,397,474 + AMB_RS20175 0.47 -0.0 4,397,475 - AMB_RS20175 0.47 +0.0 4,397,475 - AMB_RS20175 0.47 +0.6 4,397,645 + AMB_RS20175 0.84 +1.6 4,397,645 + AMB_RS20175 0.84 +0.0 4,397,645 + AMB_RS20175 0.84 +1.6 4,397,645 + AMB_RS20175 0.84 -0.4 4,397,645 + AMB_RS20175 0.84 +1.5 4,397,645 + AMB_RS20175 0.84 -0.5 4,397,646 - AMB_RS20175 0.85 +1.6 4,397,646 - AMB_RS20175 0.85 +0.0 4,397,646 - AMB_RS20175 0.85 -4.9 4,397,646 - AMB_RS20175 0.85 -0.7 4,397,646 - AMB_RS20175 0.85 -2.5 4,397,646 - AMB_RS20175 0.85 +1.6 4,397,646 - AMB_RS20175 0.85 -1.2 4,397,646 - AMB_RS20175 0.85 +0.6 4,397,646 - AMB_RS20175 0.85 +0.6 4,397,646 - AMB_RS20175 0.85 +0.6 4,397,646 - AMB_RS20175 0.85 +0.2 4,397,646 - AMB_RS20175 0.85 -1.1 4,397,646 - AMB_RS20175 0.85 -0.3 4,397,791 + -2.1 4,397,791 + -1.0 4,397,791 + +0.6 4,397,985 - AMB_RS20180 0.58 -2.5 4,398,118 + +1.2 4,398,118 + -0.4 4,398,118 + -0.3 4,398,118 + +0.6 4,398,118 + +0.2 4,398,118 + -1.6 4,398,118 + -2.4 4,398,118 + +0.0 4,398,119 - -3.4 4,398,119 - -0.4 4,398,119 - +0.6 4,398,119 - -1.2 4,398,119 - -0.7 4,398,119 - -0.1 4,398,119 - -0.5 4,398,119 - -1.0 4,398,119 - -2.2 4,398,119 - -3.9 4,398,119 - -1.9 4,398,120 + +0.6 4,398,341 - -1.7 4,398,749 - AMB_RS20185 0.45 -2.1 4,398,883 + AMB_RS20185 0.58 +0.0
Or see this region's nucleotide sequence