Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19635 and AMB_RS19640 are separated by 202 nucleotides AMB_RS19640 and AMB_RS19645 are separated by 1 nucleotides AMB_RS19645 and AMB_RS19650 are separated by 17 nucleotides
AMB_RS19635: AMB_RS19635 - hybrid sensor histidine kinase/response regulator, at 4,288,657 to 4,290,201
_RS19635
AMB_RS19640: AMB_RS19640 - hypothetical protein, at 4,290,404 to 4,290,829
_RS19640
AMB_RS19645: AMB_RS19645 - cAMP-binding protein, at 4,290,831 to 4,291,217
_RS19645
AMB_RS19650: AMB_RS19650 - L-aspartate oxidase, at 4,291,235 to 4,292,854
_RS19650
Position (kb) 4290
4291 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4289.536 kb on + strand, within AMB_RS19635 at 4289.536 kb on + strand, within AMB_RS19635 at 4289.536 kb on + strand, within AMB_RS19635 at 4289.537 kb on - strand, within AMB_RS19635 at 4289.641 kb on + strand, within AMB_RS19635 at 4289.641 kb on + strand, within AMB_RS19635 at 4289.641 kb on + strand, within AMB_RS19635 at 4289.642 kb on - strand, within AMB_RS19635 at 4289.674 kb on - strand, within AMB_RS19635 at 4289.704 kb on + strand, within AMB_RS19635 at 4289.905 kb on + strand, within AMB_RS19635 at 4289.905 kb on + strand, within AMB_RS19635 at 4290.010 kb on + strand, within AMB_RS19635 at 4290.199 kb on + strand at 4290.200 kb on - strand at 4290.200 kb on - strand at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.519 kb on + strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.520 kb on - strand, within AMB_RS19640 at 4290.684 kb on + strand, within AMB_RS19640 at 4290.684 kb on + strand, within AMB_RS19640 at 4290.685 kb on - strand, within AMB_RS19640 at 4290.739 kb on + strand, within AMB_RS19640 at 4290.832 kb on + strand at 4290.833 kb on - strand at 4290.833 kb on - strand at 4290.833 kb on - strand at 4290.833 kb on - strand at 4290.833 kb on - strand at 4291.138 kb on + strand, within AMB_RS19645 at 4291.138 kb on + strand, within AMB_RS19645 at 4291.138 kb on + strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645 at 4291.139 kb on - strand, within AMB_RS19645
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 4,289,536 + AMB_RS19635 0.57 -2.0 4,289,536 + AMB_RS19635 0.57 -0.2 4,289,536 + AMB_RS19635 0.57 -0.7 4,289,537 - AMB_RS19635 0.57 -1.5 4,289,641 + AMB_RS19635 0.64 -0.6 4,289,641 + AMB_RS19635 0.64 -0.3 4,289,641 + AMB_RS19635 0.64 -1.2 4,289,642 - AMB_RS19635 0.64 -1.6 4,289,674 - AMB_RS19635 0.66 -0.0 4,289,704 + AMB_RS19635 0.68 -1.0 4,289,905 + AMB_RS19635 0.81 -0.1 4,289,905 + AMB_RS19635 0.81 -2.0 4,290,010 + AMB_RS19635 0.88 -1.6 4,290,199 + -1.0 4,290,200 - -1.0 4,290,200 - +2.2 4,290,519 + AMB_RS19640 0.27 -0.5 4,290,519 + AMB_RS19640 0.27 +0.2 4,290,519 + AMB_RS19640 0.27 -2.5 4,290,519 + AMB_RS19640 0.27 -0.0 4,290,519 + AMB_RS19640 0.27 -0.2 4,290,519 + AMB_RS19640 0.27 +1.6 4,290,519 + AMB_RS19640 0.27 -0.1 4,290,520 - AMB_RS19640 0.27 -0.4 4,290,520 - AMB_RS19640 0.27 +0.3 4,290,520 - AMB_RS19640 0.27 -0.2 4,290,520 - AMB_RS19640 0.27 -0.9 4,290,520 - AMB_RS19640 0.27 -0.9 4,290,520 - AMB_RS19640 0.27 -0.0 4,290,520 - AMB_RS19640 0.27 -0.4 4,290,520 - AMB_RS19640 0.27 +0.3 4,290,684 + AMB_RS19640 0.66 -0.5 4,290,684 + AMB_RS19640 0.66 +0.6 4,290,685 - AMB_RS19640 0.66 -1.2 4,290,739 + AMB_RS19640 0.79 -1.9 4,290,832 + -0.4 4,290,833 - -1.0 4,290,833 - +0.3 4,290,833 - +0.6 4,290,833 - -0.5 4,290,833 - -0.3 4,291,138 + AMB_RS19645 0.79 -0.7 4,291,138 + AMB_RS19645 0.79 +0.3 4,291,138 + AMB_RS19645 0.79 -2.3 4,291,139 - AMB_RS19645 0.80 -4.0 4,291,139 - AMB_RS19645 0.80 -1.0 4,291,139 - AMB_RS19645 0.80 +0.1 4,291,139 - AMB_RS19645 0.80 -2.7 4,291,139 - AMB_RS19645 0.80 +0.1 4,291,139 - AMB_RS19645 0.80 -3.5
Or see this region's nucleotide sequence