Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19200

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
4,187,033	+		AMB_RS19195	0.54	-0.0
4,187,033	+		AMB_RS19195	0.54	-3.9
4,187,042	+		AMB_RS19195	0.54	-0.6
4,187,042	+		AMB_RS19195	0.54	-1.4
4,187,042	+		AMB_RS19195	0.54	-2.1
4,187,043	-		AMB_RS19195	0.55	+0.2
4,187,043	-		AMB_RS19195	0.55	+0.8
4,187,043	-		AMB_RS19195	0.55	-0.0
4,187,043	-		AMB_RS19195	0.55	+0.6
4,187,043	-		AMB_RS19195	0.55	-0.1
4,187,087	+		AMB_RS19195	0.57	-1.4
4,187,087	+		AMB_RS19195	0.57	-0.3
4,187,087	+		AMB_RS19195	0.57	-3.1
4,187,087	+		AMB_RS19195	0.57	-0.0
4,187,087	+		AMB_RS19195	0.57	-1.9
4,187,088	-		AMB_RS19195	0.57	-1.3
4,187,088	-		AMB_RS19195	0.57	-0.0
4,187,088	-		AMB_RS19195	0.57	-0.4
4,187,088	-		AMB_RS19195	0.57	-1.0
4,187,088	-		AMB_RS19195	0.57	-1.3
4,187,088	-		AMB_RS19195	0.57	-2.4
4,187,088	-		AMB_RS19195	0.57	+0.7
4,187,088	-		AMB_RS19195	0.57	-0.1
4,187,088	-		AMB_RS19195	0.57	-0.9
4,187,104	-		AMB_RS19195	0.58	-1.6
4,187,104	-		AMB_RS19195	0.58	+0.6
4,187,120	+		AMB_RS19195	0.58	-0.4
4,187,120	+		AMB_RS19195	0.58	+0.0
4,187,121	-		AMB_RS19195	0.58	-1.4
4,187,121	-		AMB_RS19195	0.58	-0.0
4,187,443	+		AMB_RS19195	0.74	-0.4
4,187,443	+		AMB_RS19195	0.74	-0.0
4,187,443	+		AMB_RS19195	0.74	+0.1
4,187,453	+		AMB_RS19195	0.75	-0.4
4,187,733	-		AMB_RS19195	0.89	-1.0
4,187,733	-		AMB_RS19195	0.89	-1.3
4,187,733	-		AMB_RS19195	0.89	+0.2
4,187,801	+				-0.7
4,187,861	+				+0.5
4,187,861	+				-0.4
4,187,862	-				-1.4
4,187,862	-				-0.8
4,187,906	+				-0.4
4,187,907	-				-0.9
4,188,086	-				-0.4
4,188,103	+				-0.8
4,188,103	+				+0.3
4,188,103	+				-0.8
4,188,104	-				-0.8
4,188,104	-				-2.2
4,188,127	+				-1.2
4,188,139	+				-0.4
4,188,145	-				-1.0
4,188,145	-				-1.8
4,188,145	-				-1.2
4,188,145	-				-0.6
4,188,152	+				-0.4
4,188,152	+				-1.2
4,188,152	+				-1.7
4,188,153	-				-0.8
4,188,259	+		AMB_RS19200	0.14	-3.3
4,188,259	+		AMB_RS19200	0.14	-2.3
4,188,260	-		AMB_RS19200	0.14	-0.9
4,188,260	-		AMB_RS19200	0.14	-0.8
4,188,260	-		AMB_RS19200	0.14	-1.6
4,188,260	-		AMB_RS19200	0.14	-0.6
4,188,260	-		AMB_RS19200	0.14	-2.1
4,188,260	-		AMB_RS19200	0.14	-4.0
4,188,349	+		AMB_RS19200	0.19	-0.1
4,188,349	+		AMB_RS19200	0.19	+1.6
4,188,349	+		AMB_RS19200	0.19	-0.8
4,188,349	+		AMB_RS19200	0.19	+0.6
4,188,349	+		AMB_RS19200	0.19	+0.0
4,188,350	-		AMB_RS19200	0.19	-1.1
4,188,350	-		AMB_RS19200	0.19	-0.0
4,188,350	-		AMB_RS19200	0.19	-0.4
4,188,622	+		AMB_RS19200	0.32	-1.4
4,188,622	+		AMB_RS19200	0.32	+1.6
4,188,622	+		AMB_RS19200	0.32	-0.9
4,188,622	+		AMB_RS19200	0.32	-1.8
4,188,622	+		AMB_RS19200	0.32	-1.8
4,188,623	-		AMB_RS19200	0.32	-1.6
4,188,623	-		AMB_RS19200	0.32	-0.6
4,188,623	-		AMB_RS19200	0.32	-1.0
4,188,625	+		AMB_RS19200	0.32	-0.4
4,188,625	+		AMB_RS19200	0.32	-0.4
4,188,625	+		AMB_RS19200	0.32	+0.6
4,188,625	+		AMB_RS19200	0.32	-2.0
4,188,625	+		AMB_RS19200	0.32	-1.0
4,188,626	-		AMB_RS19200	0.32	-0.3
4,188,626	-		AMB_RS19200	0.32	-2.3
4,188,626	-		AMB_RS19200	0.32	-1.7
4,188,626	-		AMB_RS19200	0.32	+0.4
4,188,626	-		AMB_RS19200	0.32	-1.4
4,188,722	-		AMB_RS19200	0.37	-1.1
4,188,733	+		AMB_RS19200	0.37	-0.6
4,188,775	+		AMB_RS19200	0.39	-0.6
4,188,776	-		AMB_RS19200	0.39	-0.8
4,188,776	-		AMB_RS19200	0.39	-0.6
4,188,814	+		AMB_RS19200	0.41	-0.4
4,188,964	+		AMB_RS19200	0.48	-3.4
4,188,964	+		AMB_RS19200	0.48	-1.2
4,189,066	+		AMB_RS19200	0.53	-0.7
4,189,066	+		AMB_RS19200	0.53	-1.0
4,189,066	+		AMB_RS19200	0.53	-1.6
4,189,066	+		AMB_RS19200	0.53	-0.1
4,189,067	-		AMB_RS19200	0.53	-0.4
4,189,067	-		AMB_RS19200	0.53	-1.6
4,189,067	-		AMB_RS19200	0.53	-0.8
4,189,067	-		AMB_RS19200	0.53	-1.4
4,189,111	+		AMB_RS19200	0.55	-1.2
4,189,111	+		AMB_RS19200	0.55	+0.6
4,189,111	+		AMB_RS19200	0.55	+0.2
4,189,111	+		AMB_RS19200	0.55	-0.2
4,189,111	+		AMB_RS19200	0.55	-1.4
4,189,112	-		AMB_RS19200	0.55	-0.8
4,189,112	-		AMB_RS19200	0.55	-0.8
4,189,112	-		AMB_RS19200	0.55	-1.3
4,189,112	-		AMB_RS19200	0.55	+1.6
4,189,112	-		AMB_RS19200	0.55	-2.6
4,189,112	-		AMB_RS19200	0.55	-1.4
4,189,112	-		AMB_RS19200	0.55	-0.6
4,189,112	-		AMB_RS19200	0.55	-0.6
4,189,112	-		AMB_RS19200	0.55	-0.4
4,189,115	-		AMB_RS19200	0.56	-0.0
4,189,144	+		AMB_RS19200	0.57	-0.7
4,189,144	+		AMB_RS19200	0.57	-0.7
4,189,323	-		AMB_RS19200	0.66	-3.8
4,189,323	-		AMB_RS19200	0.66	-3.0
4,189,825	+		AMB_RS19200	0.90	-2.0
4,189,825	+		AMB_RS19200	0.90	-1.6
4,189,825	+		AMB_RS19200	0.90	-0.4
4,189,825	+		AMB_RS19200	0.90	-0.9
4,189,825	+		AMB_RS19200	0.90	-0.5
4,189,825	+		AMB_RS19200	0.90	-1.9
4,189,826	-		AMB_RS19200	0.90	-0.1
4,189,826	-		AMB_RS19200	0.90	-1.0
4,189,826	-		AMB_RS19200	0.90	-3.4
4,190,035	+				-1.2
4,190,035	+				-0.5
4,190,035	+				-3.0
4,190,036	-				-0.4
4,190,036	-				-1.4
4,190,036	-				-0.8
4,190,159	+				-0.8
4,190,159	+				-1.2
4,190,159	+				-0.4
4,190,198	-				-0.7
4,190,471	+		AMB_RS19205	0.21	-0.0
4,190,471	+		AMB_RS19205	0.21	+0.7
4,190,471	+		AMB_RS19205	0.21	+0.1
4,190,472	-		AMB_RS19205	0.21	+0.4
4,190,472	-		AMB_RS19205	0.21	-2.0
4,190,472	-		AMB_RS19205	0.21	-1.0
4,190,574	+		AMB_RS19205	0.25	-0.5
4,190,575	-		AMB_RS19205	0.25	-3.7
4,190,575	-		AMB_RS19205	0.25	-0.4
4,190,998	-		AMB_RS19205	0.43	-0.0
4,190,998	-		AMB_RS19205	0.43	-0.7