Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15260

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15255 and AMB_RS15260 are separated by 42 nucleotidesAMB_RS15260 and AMB_RS15265 are separated by 23 nucleotidesAMB_RS15265 and AMB_RS15270 overlap by 4 nucleotides AMB_RS15255: AMB_RS15255 - IscS subfamily cysteine desulfurase, at 3,270,051 to 3,271,307 _RS15255 AMB_RS15260: AMB_RS15260 - cysteine desulfurase, at 3,271,350 to 3,272,483 _RS15260 AMB_RS15265: AMB_RS15265 - Rrf2 family transcriptional regulator, at 3,272,507 to 3,272,980 _RS15265 AMB_RS15270: AMB_RS15270 - serine O-acetyltransferase, at 3,272,977 to 3,273,768 _RS15270 Position (kb) 3271 3272 3273Strain fitness (log2 ratio) -2 -1 0 1at 3271.323 kb on - strandat 3271.323 kb on - strandat 3271.323 kb on - strandat 3273.035 kb on - strandat 3273.231 kb on - strand, within AMB_RS15270at 3273.231 kb on - strand, within AMB_RS15270

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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3,271,323 - +0.5
3,271,323 - -1.8
3,271,323 - -1.8
3,273,035 - -0.9
3,273,231 - AMB_RS15270 0.32 -2.7
3,273,231 - AMB_RS15270 0.32 -1.7

Or see this region's nucleotide sequence