Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS14080 and AMB_RS14085 overlap by 41 nucleotides AMB_RS14085 and AMB_RS14090 are separated by 82 nucleotides
AMB_RS14080: AMB_RS14080 - D-amino-acid dehydrogenase, at 2,989,482 to 2,990,750
_RS14080
AMB_RS14085: AMB_RS14085 - hemerythrin-like protein, at 2,990,710 to 2,991,225
_RS14085
AMB_RS14090: AMB_RS14090 - two-component sensor histidine kinase, at 2,991,308 to 2,993,026
_RS14090
Position (kb)
2990
2991
2992 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2990.740 kb on - strand at 2990.740 kb on - strand at 2990.740 kb on - strand at 2990.749 kb on - strand at 2990.815 kb on - strand, within AMB_RS14085 at 2990.862 kb on + strand, within AMB_RS14085 at 2990.935 kb on + strand, within AMB_RS14085 at 2990.936 kb on - strand, within AMB_RS14085 at 2990.936 kb on - strand, within AMB_RS14085 at 2991.064 kb on + strand, within AMB_RS14085 at 2991.147 kb on + strand, within AMB_RS14085 at 2991.147 kb on + strand, within AMB_RS14085 at 2991.148 kb on - strand, within AMB_RS14085 at 2991.148 kb on - strand, within AMB_RS14085 at 2991.425 kb on + strand at 2991.426 kb on - strand at 2991.426 kb on - strand at 2991.426 kb on - strand at 2991.557 kb on + strand, within AMB_RS14090 at 2991.557 kb on + strand, within AMB_RS14090 at 2991.557 kb on + strand, within AMB_RS14090 at 2991.557 kb on + strand, within AMB_RS14090 at 2991.650 kb on + strand, within AMB_RS14090 at 2991.650 kb on + strand, within AMB_RS14090 at 2991.650 kb on + strand, within AMB_RS14090 at 2991.828 kb on - strand, within AMB_RS14090 at 2991.828 kb on - strand, within AMB_RS14090 at 2991.828 kb on - strand, within AMB_RS14090 at 2991.828 kb on - strand, within AMB_RS14090 at 2991.898 kb on + strand, within AMB_RS14090 at 2991.918 kb on - strand, within AMB_RS14090 at 2992.086 kb on + strand, within AMB_RS14090 at 2992.115 kb on + strand, within AMB_RS14090 at 2992.116 kb on - strand, within AMB_RS14090 at 2992.116 kb on - strand, within AMB_RS14090
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 2,990,740 - -0.5 2,990,740 - -0.5 2,990,740 - -0.1 2,990,749 - +0.3 2,990,815 - AMB_RS14085 0.20 -2.1 2,990,862 + AMB_RS14085 0.29 -0.9 2,990,935 + AMB_RS14085 0.44 +0.4 2,990,936 - AMB_RS14085 0.44 +0.2 2,990,936 - AMB_RS14085 0.44 -1.3 2,991,064 + AMB_RS14085 0.69 -1.0 2,991,147 + AMB_RS14085 0.85 -3.2 2,991,147 + AMB_RS14085 0.85 -1.1 2,991,148 - AMB_RS14085 0.85 +0.2 2,991,148 - AMB_RS14085 0.85 -0.5 2,991,425 + -0.4 2,991,426 - -2.9 2,991,426 - -0.3 2,991,426 - -0.3 2,991,557 + AMB_RS14090 0.14 -2.3 2,991,557 + AMB_RS14090 0.14 -1.1 2,991,557 + AMB_RS14090 0.14 -0.2 2,991,557 + AMB_RS14090 0.14 -1.0 2,991,650 + AMB_RS14090 0.20 -0.7 2,991,650 + AMB_RS14090 0.20 -1.6 2,991,650 + AMB_RS14090 0.20 -0.6 2,991,828 - AMB_RS14090 0.30 -1.4 2,991,828 - AMB_RS14090 0.30 -1.7 2,991,828 - AMB_RS14090 0.30 -1.7 2,991,828 - AMB_RS14090 0.30 -1.5 2,991,898 + AMB_RS14090 0.34 +1.2 2,991,918 - AMB_RS14090 0.35 -1.1 2,992,086 + AMB_RS14090 0.45 -0.8 2,992,115 + AMB_RS14090 0.47 -1.0 2,992,116 - AMB_RS14090 0.47 +1.1 2,992,116 - AMB_RS14090 0.47 +1.5
Or see this region's nucleotide sequence