Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11240

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
2,418,852	+				-1.4
2,418,980	-				-0.4
2,419,013	-				-2.5
2,419,073	+				-1.1
2,419,073	+				-2.9
2,419,073	+				-2.9
2,419,073	+				-0.5
2,419,073	+				-1.0
2,419,073	+				-3.9
2,419,073	+				-1.4
2,419,073	+				-2.8
2,419,073	+				-0.4
2,419,073	+				-1.2
2,419,073	+				-0.3
2,419,074	-				-0.5
2,419,198	-				-0.1
2,419,214	+				-1.1
2,419,276	+				-0.6
2,419,276	+				+1.5
2,419,276	+				-1.7
2,419,277	-				-0.9
2,419,277	-				-0.0
2,419,277	-				+0.5
2,419,277	-				-1.4
2,419,288	-				-1.3
2,419,438	+		AMB_RS11235	0.29	-1.3
2,419,438	+		AMB_RS11235	0.29	-0.5
2,419,439	-		AMB_RS11235	0.29	-1.7
2,419,459	+		AMB_RS11235	0.33	-1.1
2,419,460	-		AMB_RS11235	0.33	-0.9
2,419,558	+		AMB_RS11235	0.51	-0.1
2,419,558	+		AMB_RS11235	0.51	-1.5
2,419,558	+		AMB_RS11235	0.51	-2.4
2,419,559	-		AMB_RS11235	0.51	-1.4
2,419,559	-		AMB_RS11235	0.51	+0.2
2,419,559	-		AMB_RS11235	0.51	-0.1
2,419,559	-		AMB_RS11235	0.51	-2.2
2,419,559	-		AMB_RS11235	0.51	-0.1
2,419,559	-		AMB_RS11235	0.51	-0.3
2,419,585	+		AMB_RS11235	0.56	+0.5
2,419,585	+		AMB_RS11235	0.56	-1.1
2,419,586	-		AMB_RS11235	0.56	-1.7
2,419,618	+		AMB_RS11235	0.62	-0.4
2,419,619	-		AMB_RS11235	0.62	+1.4
2,419,619	-		AMB_RS11235	0.62	-1.7
2,419,766	-		AMB_RS11235	0.89	-0.5
2,419,766	-		AMB_RS11235	0.89	-1.4
2,419,822	+				-1.0
2,420,099	+		AMB_RS11240	0.15	+0.5
2,420,099	+		AMB_RS11240	0.15	-1.4
2,420,099	+		AMB_RS11240	0.15	-0.1
2,420,162	+		AMB_RS11240	0.19	-1.5
2,420,163	-		AMB_RS11240	0.19	+0.5
2,420,163	-		AMB_RS11240	0.19	-1.5
2,420,240	+		AMB_RS11240	0.24	-1.7
2,420,241	-		AMB_RS11240	0.24	-0.7
2,420,241	-		AMB_RS11240	0.24	-0.2
2,420,241	-		AMB_RS11240	0.24	-0.1
2,420,270	+		AMB_RS11240	0.25	+0.2
2,420,270	+		AMB_RS11240	0.25	-0.4
2,420,270	+		AMB_RS11240	0.25	-0.1
2,420,270	+		AMB_RS11240	0.25	-2.1
2,420,271	-		AMB_RS11240	0.26	+0.5
2,420,271	-		AMB_RS11240	0.26	-0.9
2,420,271	-		AMB_RS11240	0.26	-0.9
2,420,360	+		AMB_RS11240	0.31	-0.2
2,420,360	+		AMB_RS11240	0.31	-0.8
2,420,360	+		AMB_RS11240	0.31	-1.9
2,420,361	-		AMB_RS11240	0.31	-2.9
2,420,361	-		AMB_RS11240	0.31	-0.5
2,420,361	-		AMB_RS11240	0.31	+0.7
2,420,383	+		AMB_RS11240	0.32	-0.4
2,420,420	+		AMB_RS11240	0.34	-0.1
2,420,420	+		AMB_RS11240	0.34	-0.2
2,420,421	-		AMB_RS11240	0.34	+0.7
2,420,421	-		AMB_RS11240	0.34	-0.9
2,420,421	-		AMB_RS11240	0.34	-0.2
2,420,421	-		AMB_RS11240	0.34	-1.1
2,420,421	-		AMB_RS11240	0.34	-0.3
2,420,421	-		AMB_RS11240	0.34	-1.3
2,420,421	-		AMB_RS11240	0.34	-3.9
2,420,421	-		AMB_RS11240	0.34	-1.9
2,420,504	+		AMB_RS11240	0.39	-0.4
2,420,504	+		AMB_RS11240	0.39	-1.4
2,420,504	+		AMB_RS11240	0.39	-1.6
2,420,504	+		AMB_RS11240	0.39	-0.4
2,420,505	-		AMB_RS11240	0.39	-1.3
2,420,505	-		AMB_RS11240	0.39	+1.2
2,420,576	+		AMB_RS11240	0.44	-0.5
2,420,577	-		AMB_RS11240	0.44	-2.5
2,420,648	+		AMB_RS11240	0.48	+1.0
2,420,648	+		AMB_RS11240	0.48	-0.1
2,420,648	+		AMB_RS11240	0.48	-0.9
2,420,649	-		AMB_RS11240	0.48	-1.4
2,420,649	-		AMB_RS11240	0.48	-0.5
2,420,649	-		AMB_RS11240	0.48	+0.3
2,420,649	-		AMB_RS11240	0.48	-0.4
2,420,714	+		AMB_RS11240	0.52	-0.1
2,420,715	-		AMB_RS11240	0.52	-1.5
2,420,716	+		AMB_RS11240	0.52	-1.5
2,420,716	+		AMB_RS11240	0.52	-0.2
2,420,717	-		AMB_RS11240	0.52	-1.0
2,420,717	-		AMB_RS11240	0.52	-0.2
2,420,717	-		AMB_RS11240	0.52	-0.9
2,420,736	-		AMB_RS11240	0.53	+0.1
2,420,744	+		AMB_RS11240	0.54	-0.5
2,420,744	+		AMB_RS11240	0.54	-1.3
2,420,744	+		AMB_RS11240	0.54	-2.4
2,420,744	+		AMB_RS11240	0.54	-0.6
2,420,744	+		AMB_RS11240	0.54	-1.1
2,420,745	-		AMB_RS11240	0.54	+0.2
2,420,745	-		AMB_RS11240	0.54	+0.1
2,420,745	-		AMB_RS11240	0.54	-0.1
2,420,745	-		AMB_RS11240	0.54	+1.1
2,420,745	-		AMB_RS11240	0.54	-2.9
2,420,745	-		AMB_RS11240	0.54	-0.1
2,420,745	-		AMB_RS11240	0.54	-0.5
2,420,745	-		AMB_RS11240	0.54	+0.1
2,420,981	+		AMB_RS11240	0.68	-0.5
2,420,981	+		AMB_RS11240	0.68	-2.1
2,420,981	+		AMB_RS11240	0.68	-0.8
2,420,982	-		AMB_RS11240	0.68	+0.4
2,420,982	-		AMB_RS11240	0.68	+0.6
2,420,982	-		AMB_RS11240	0.68	-0.2
2,420,982	-		AMB_RS11240	0.68	-0.1
2,420,982	-		AMB_RS11240	0.68	-3.2
2,420,982	-		AMB_RS11240	0.68	-0.5
2,420,982	-		AMB_RS11240	0.68	-2.1
2,420,982	-		AMB_RS11240	0.68	-1.5
2,421,047	+		AMB_RS11240	0.72	-0.4
2,421,047	+		AMB_RS11240	0.72	-0.7
2,421,047	+		AMB_RS11240	0.72	-0.1
2,421,047	+		AMB_RS11240	0.72	-0.1
2,421,048	-		AMB_RS11240	0.72	-0.1
2,421,048	-		AMB_RS11240	0.72	-0.4
2,421,048	-		AMB_RS11240	0.72	-0.5
2,421,048	-		AMB_RS11240	0.72	-1.7
2,421,048	-		AMB_RS11240	0.72	+0.3
2,421,113	+		AMB_RS11240	0.76	-2.1
2,421,167	-		AMB_RS11240	0.79	-0.9
2,421,399	-				+0.5
2,421,399	-				-0.2
2,421,614	+				-0.4
2,421,614	+				+0.5
2,421,614	+				-1.7
2,421,615	-				-2.1
2,421,981	+		AMB_RS11245	0.42	-0.2
2,421,994	-		AMB_RS11245	0.44	-0.6
2,421,994	-		AMB_RS11245	0.44	+0.4
2,422,097	-		AMB_RS11245	0.56	-0.7
2,422,185	+		AMB_RS11245	0.66	+0.5
2,422,259	+		AMB_RS11245	0.74	-0.1
2,422,260	-		AMB_RS11245	0.74	-1.0
2,422,317	+		AMB_RS11245	0.81	+0.6
2,422,317	+		AMB_RS11245	0.81	-0.3
2,422,318	-		AMB_RS11245	0.81	+1.6
2,422,318	-		AMB_RS11245	0.81	-0.5
2,422,318	-		AMB_RS11245	0.81	-0.3
2,422,318	-		AMB_RS11245	0.81	+0.5
2,422,356	+		AMB_RS11245	0.85	+1.5
2,422,356	+		AMB_RS11245	0.85	-1.9
2,422,356	+		AMB_RS11245	0.85	-0.1
2,422,357	-		AMB_RS11245	0.86	-2.4
2,422,357	-		AMB_RS11245	0.86	-0.1
2,422,357	-		AMB_RS11245	0.86	-0.8
2,422,479	+				-0.1
2,422,479	+				-1.1
2,422,480	-				+0.5