Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11145

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS11140 and AMB_RS11145 overlap by 4 nucleotidesAMB_RS11145 and AMB_RS11150 are separated by 44 nucleotides AMB_RS11140: AMB_RS11140 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 2,397,158 to 2,398,267 _RS11140 AMB_RS11145: AMB_RS11145 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 2,398,264 to 2,398,785 _RS11145 AMB_RS11150: AMB_RS11150 - GGDEF domain-containing protein, at 2,398,830 to 2,399,675 _RS11150 Position (kb) 2398 2399Strain fitness (log2 ratio) -2 -1 0 1at 2398.806 kb on - strandat 2398.896 kb on + strandat 2398.896 kb on + strandat 2398.897 kb on - strandat 2399.212 kb on - strand, within AMB_RS11150at 2399.553 kb on + strand, within AMB_RS11150at 2399.554 kb on - strand, within AMB_RS11150at 2399.554 kb on - strand, within AMB_RS11150at 2399.596 kb on - strandat 2399.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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2,398,806 - -1.6
2,398,896 + +1.2
2,398,896 + +0.2
2,398,897 - -1.4
2,399,212 - AMB_RS11150 0.45 -1.0
2,399,553 + AMB_RS11150 0.85 -1.4
2,399,554 - AMB_RS11150 0.86 -0.2
2,399,554 - AMB_RS11150 0.86 +0.6
2,399,596 - -2.3
2,399,681 + -2.6

Or see this region's nucleotide sequence