Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10815

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
2,315,292	+		AMB_RS10810	0.40	-4.5
2,315,292	+		AMB_RS10810	0.40	-4.3
2,315,292	+		AMB_RS10810	0.40	-2.7
2,315,292	+		AMB_RS10810	0.40	-4.0
2,315,293	-		AMB_RS10810	0.41	+1.4
2,315,293	-		AMB_RS10810	0.41	-3.3
2,315,293	-		AMB_RS10810	0.41	-1.4
2,315,391	+		AMB_RS10810	0.48	-4.1
2,315,391	+		AMB_RS10810	0.48	-5.3
2,315,392	-		AMB_RS10810	0.48	-3.9
2,315,392	-		AMB_RS10810	0.48	-3.0
2,315,392	-		AMB_RS10810	0.48	-1.6
2,315,392	-		AMB_RS10810	0.48	-2.1
2,315,392	-		AMB_RS10810	0.48	-1.1
2,315,392	-		AMB_RS10810	0.48	-6.2
2,315,541	+		AMB_RS10810	0.60	-4.6
2,315,664	+		AMB_RS10810	0.69	-0.6
2,315,952	+				-5.4
2,316,066	+				-2.1
2,316,134	+				-1.6
2,316,135	-				-1.4
2,316,173	+				-4.1
2,316,173	+				-3.5
2,316,174	-				-5.2
2,316,314	+		AMB_RS10815	0.18	-3.6
2,316,314	+		AMB_RS10815	0.18	-0.6
2,316,326	+		AMB_RS10815	0.19	-4.2
2,316,326	+		AMB_RS10815	0.19	-3.3
2,316,326	+		AMB_RS10815	0.19	-4.1
2,316,327	-		AMB_RS10815	0.19	-2.0
2,316,327	-		AMB_RS10815	0.19	-0.2
2,316,327	-		AMB_RS10815	0.19	-3.7
2,316,327	-		AMB_RS10815	0.19	-2.2
2,316,371	+		AMB_RS10815	0.23	-5.5
2,316,371	+		AMB_RS10815	0.23	-1.7
2,316,371	+		AMB_RS10815	0.23	-7.3
2,316,371	+		AMB_RS10815	0.23	-2.3
2,316,371	+		AMB_RS10815	0.23	-1.1
2,316,372	-		AMB_RS10815	0.23	-4.4
2,316,386	+		AMB_RS10815	0.24	-3.5
2,316,440	+		AMB_RS10815	0.28	-1.1
2,316,441	-		AMB_RS10815	0.28	-0.1
2,316,461	+		AMB_RS10815	0.30	-5.1
2,316,462	-		AMB_RS10815	0.30	-0.1
2,316,494	+		AMB_RS10815	0.32	-1.4
2,316,494	+		AMB_RS10815	0.32	-4.8
2,316,494	+		AMB_RS10815	0.32	-5.3
2,316,558	-		AMB_RS10815	0.37	-2.9
2,316,558	-		AMB_RS10815	0.37	-3.8
2,316,575	+		AMB_RS10815	0.38	-2.5
2,316,575	+		AMB_RS10815	0.38	-4.4
2,316,576	-		AMB_RS10815	0.38	-4.0
2,316,576	-		AMB_RS10815	0.38	-0.9
2,316,647	+		AMB_RS10815	0.44	-0.1
2,316,647	+		AMB_RS10815	0.44	+0.8
2,316,647	+		AMB_RS10815	0.44	-1.4
2,316,647	+		AMB_RS10815	0.44	-0.6
2,316,647	+		AMB_RS10815	0.44	-2.6
2,316,648	-		AMB_RS10815	0.44	-3.6
2,316,650	+		AMB_RS10815	0.44	-3.1
2,316,701	+		AMB_RS10815	0.48	-0.1
2,316,701	+		AMB_RS10815	0.48	-5.4
2,316,701	+		AMB_RS10815	0.48	-0.1
2,316,701	+		AMB_RS10815	0.48	-5.0
2,316,701	+		AMB_RS10815	0.48	-3.8
2,316,702	-		AMB_RS10815	0.48	-5.3
2,316,702	-		AMB_RS10815	0.48	-6.1
2,316,704	+		AMB_RS10815	0.48	-0.1
2,316,719	+		AMB_RS10815	0.49	-1.7
2,316,720	-		AMB_RS10815	0.50	-0.6
2,316,804	-		AMB_RS10815	0.56	-2.0
2,316,891	-		AMB_RS10815	0.63	-2.4
2,316,962	+		AMB_RS10815	0.68	-7.7
2,316,962	+		AMB_RS10815	0.68	-6.5
2,316,962	+		AMB_RS10815	0.68	-0.6
2,316,963	-		AMB_RS10815	0.68	-3.5
2,316,963	-		AMB_RS10815	0.68	-2.1
2,316,963	-		AMB_RS10815	0.68	-4.9
2,316,963	-		AMB_RS10815	0.68	-6.1
2,317,001	+		AMB_RS10815	0.71	-3.0
2,317,001	+		AMB_RS10815	0.71	-4.6
2,317,001	+		AMB_RS10815	0.71	-2.0
2,317,001	+		AMB_RS10815	0.71	-4.1
2,317,002	-		AMB_RS10815	0.71	-4.9
2,317,014	-		AMB_RS10815	0.72	+0.5
2,317,014	-		AMB_RS10815	0.72	-2.4
2,317,043	+		AMB_RS10815	0.74	-4.2
2,317,103	+		AMB_RS10815	0.79	-1.6
2,317,103	+		AMB_RS10815	0.79	-1.1
2,317,103	+		AMB_RS10815	0.79	-5.1
2,317,103	+		AMB_RS10815	0.79	-0.6
2,317,103	+		AMB_RS10815	0.79	-5.0
2,317,103	+		AMB_RS10815	0.79	-1.6
2,317,103	+		AMB_RS10815	0.79	+1.4
2,317,104	-		AMB_RS10815	0.79	-4.5
2,317,151	+		AMB_RS10815	0.83	-3.5
2,317,152	-		AMB_RS10815	0.83	-3.5
2,317,307	+				-3.1
2,317,308	-				-4.6
2,317,473	+				-4.4
2,317,473	+				-0.6
2,317,473	+				-0.9
2,317,474	-				-2.6
2,317,474	-				-3.4
2,317,474	-				-3.1
2,317,474	-				-0.7
2,317,474	-				-4.6
2,317,554	+		AMB_RS10820	0.15	-1.4
2,317,554	+		AMB_RS10820	0.15	-1.4
2,317,554	+		AMB_RS10820	0.15	-2.4
2,317,555	-		AMB_RS10820	0.15	-1.7
2,317,555	-		AMB_RS10820	0.15	-1.4
2,317,555	-		AMB_RS10820	0.15	-6.1
2,317,555	-		AMB_RS10820	0.15	-3.4
2,317,629	+		AMB_RS10820	0.21	-4.4
2,317,629	+		AMB_RS10820	0.21	-3.5
2,317,629	+		AMB_RS10820	0.21	-2.3
2,317,629	+		AMB_RS10820	0.21	-0.6
2,317,629	+		AMB_RS10820	0.21	-4.2
2,317,629	+		AMB_RS10820	0.21	-0.1
2,317,629	+		AMB_RS10820	0.21	-0.6
2,317,629	+		AMB_RS10820	0.21	-1.1
2,317,630	-		AMB_RS10820	0.21	-3.1
2,317,630	-		AMB_RS10820	0.21	-5.1
2,317,630	-		AMB_RS10820	0.21	-6.0
2,317,662	+		AMB_RS10820	0.24	-5.6
2,317,663	-		AMB_RS10820	0.24	-0.9
2,317,663	-		AMB_RS10820	0.24	-5.0
2,317,755	+		AMB_RS10820	0.32	-4.9
2,317,755	+		AMB_RS10820	0.32	-6.9
2,317,755	+		AMB_RS10820	0.32	-5.0
2,317,755	+		AMB_RS10820	0.32	-0.1
2,317,755	+		AMB_RS10820	0.32	-3.2
2,317,755	+		AMB_RS10820	0.32	-2.8
2,317,755	+		AMB_RS10820	0.32	-3.6
2,317,756	-		AMB_RS10820	0.32	-5.0
2,317,756	-		AMB_RS10820	0.32	+0.4
2,317,756	-		AMB_RS10820	0.32	-1.4
2,317,756	-		AMB_RS10820	0.32	-5.3
2,317,756	-		AMB_RS10820	0.32	-5.6
2,317,756	-		AMB_RS10820	0.32	-0.6
2,317,756	-		AMB_RS10820	0.32	-6.8
2,317,818	+		AMB_RS10820	0.37	-4.8
2,317,818	+		AMB_RS10820	0.37	-1.1
2,317,818	+		AMB_RS10820	0.37	-3.6
2,317,818	+		AMB_RS10820	0.37	-2.4
2,317,819	-		AMB_RS10820	0.37	-1.4
2,317,819	-		AMB_RS10820	0.37	-4.1
2,317,819	-		AMB_RS10820	0.37	-4.4
2,317,878	+		AMB_RS10820	0.42	-4.4
2,317,878	+		AMB_RS10820	0.42	-1.1
2,317,879	-		AMB_RS10820	0.43	+0.4
2,317,879	-		AMB_RS10820	0.43	-0.1
2,317,879	-		AMB_RS10820	0.43	-1.9
2,317,879	-		AMB_RS10820	0.43	-0.1
2,317,941	+		AMB_RS10820	0.48	-3.2
2,317,941	+		AMB_RS10820	0.48	-6.7
2,317,941	+		AMB_RS10820	0.48	-1.7
2,317,941	+		AMB_RS10820	0.48	-2.1
2,317,941	+		AMB_RS10820	0.48	-5.2
2,317,942	-		AMB_RS10820	0.48	-4.1
2,317,942	-		AMB_RS10820	0.48	-2.6
2,317,942	-		AMB_RS10820	0.48	-7.4
2,317,942	-		AMB_RS10820	0.48	-4.3
2,317,989	+		AMB_RS10820	0.52	-4.9
2,317,989	+		AMB_RS10820	0.52	-3.0
2,317,989	+		AMB_RS10820	0.52	-4.8
2,317,990	-		AMB_RS10820	0.52	-5.1
2,317,990	-		AMB_RS10820	0.52	-3.5
2,317,990	-		AMB_RS10820	0.52	+1.4
2,318,022	+		AMB_RS10820	0.55	-2.0
2,318,023	-		AMB_RS10820	0.55	-1.1
2,318,023	-		AMB_RS10820	0.55	-2.7
2,318,023	-		AMB_RS10820	0.55	-4.9
2,318,023	-		AMB_RS10820	0.55	+0.3
2,318,023	-		AMB_RS10820	0.55	-1.9
2,318,023	-		AMB_RS10820	0.55	-1.6
2,318,115	+		AMB_RS10820	0.63	-2.8
2,318,116	-		AMB_RS10820	0.63	-3.9
2,318,116	-		AMB_RS10820	0.63	-5.5
2,318,116	-		AMB_RS10820	0.63	-2.5
2,318,116	-		AMB_RS10820	0.63	-5.9
2,318,118	+		AMB_RS10820	0.63	-1.4
2,318,118	+		AMB_RS10820	0.63	+0.4
2,318,118	+		AMB_RS10820	0.63	-4.9
2,318,118	+		AMB_RS10820	0.63	-4.9
2,318,142	+		AMB_RS10820	0.65	-2.1
2,318,142	+		AMB_RS10820	0.65	-4.6
2,318,143	-		AMB_RS10820	0.65	-4.0
2,318,313	+		AMB_RS10820	0.79	-4.4
2,318,313	+		AMB_RS10820	0.79	-4.3
2,318,313	+		AMB_RS10820	0.79	-2.3
2,318,313	+		AMB_RS10820	0.79	-0.3
2,318,314	-		AMB_RS10820	0.80	-4.2
2,318,314	-		AMB_RS10820	0.80	-4.5
2,318,314	-		AMB_RS10820	0.80	-0.9
2,318,314	-		AMB_RS10820	0.80	-0.1
2,318,314	-		AMB_RS10820	0.80	-4.1
2,318,322	+		AMB_RS10820	0.80	-5.9
2,318,322	+		AMB_RS10820	0.80	-5.0
2,318,323	-		AMB_RS10820	0.80	-3.0
2,318,325	+		AMB_RS10820	0.80	-6.5
2,318,325	+		AMB_RS10820	0.80	-5.2