Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23355 and AMB_RS09245 are separated by 86 nucleotides AMB_RS09245 and AMB_RS09250 overlap by 4 nucleotides AMB_RS09250 and AMB_RS09255 are separated by 13 nucleotides AMB_RS09255 and AMB_RS09260 overlap by 1 nucleotides
AMB_RS23355: AMB_RS23355 - two-component sensor histidine kinase, at 1,965,945 to 1,967,540
_RS23355
AMB_RS09245: AMB_RS09245 - transcriptional regulator, at 1,967,627 to 1,968,043
_RS09245
AMB_RS09250: AMB_RS09250 - arsenate reductase ArsC, at 1,968,040 to 1,968,540
_RS09250
AMB_RS09255: AMB_RS09255 - arsenate reductase ArsC, at 1,968,554 to 1,969,012
_RS09255
AMB_RS09260: AMB_RS09260 - arsenical-resistance protein, at 1,969,012 to 1,970,070
_RS09260
Position (kb) 1967
1968
1969 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1966.851 kb on + strand, within AMB_RS23355 at 1966.899 kb on + strand, within AMB_RS23355 at 1966.900 kb on - strand, within AMB_RS23355 at 1966.900 kb on - strand, within AMB_RS23355 at 1966.900 kb on - strand, within AMB_RS23355 at 1967.019 kb on + strand, within AMB_RS23355 at 1967.020 kb on - strand, within AMB_RS23355 at 1967.020 kb on - strand, within AMB_RS23355 at 1967.037 kb on - strand, within AMB_RS23355 at 1967.093 kb on + strand, within AMB_RS23355 at 1967.093 kb on + strand, within AMB_RS23355 at 1967.094 kb on - strand, within AMB_RS23355 at 1967.094 kb on - strand, within AMB_RS23355 at 1967.376 kb on + strand, within AMB_RS23355 at 1967.377 kb on - strand, within AMB_RS23355 at 1967.377 kb on - strand, within AMB_RS23355 at 1967.385 kb on - strand at 1967.683 kb on + strand, within AMB_RS09245 at 1967.683 kb on + strand, within AMB_RS09245 at 1967.683 kb on + strand, within AMB_RS09245 at 1967.828 kb on + strand, within AMB_RS09245 at 1967.828 kb on + strand, within AMB_RS09245 at 1967.828 kb on + strand, within AMB_RS09245 at 1967.829 kb on - strand, within AMB_RS09245 at 1967.829 kb on - strand, within AMB_RS09245 at 1967.831 kb on + strand, within AMB_RS09245 at 1967.832 kb on - strand, within AMB_RS09245 at 1967.861 kb on + strand, within AMB_RS09245 at 1968.055 kb on + strand at 1968.055 kb on + strand at 1968.055 kb on + strand at 1968.056 kb on - strand at 1968.056 kb on - strand at 1968.056 kb on - strand at 1968.649 kb on + strand, within AMB_RS09255 at 1968.649 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.662 kb on + strand, within AMB_RS09255 at 1968.663 kb on - strand, within AMB_RS09255 at 1968.663 kb on - strand, within AMB_RS09255 at 1968.664 kb on + strand, within AMB_RS09255 at 1968.665 kb on - strand, within AMB_RS09255 at 1968.944 kb on + strand, within AMB_RS09255 at 1968.944 kb on + strand, within AMB_RS09255 at 1968.945 kb on - strand, within AMB_RS09255
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 1,966,851 + AMB_RS23355 0.57 -1.4 1,966,899 + AMB_RS23355 0.60 +0.3 1,966,900 - AMB_RS23355 0.60 +1.0 1,966,900 - AMB_RS23355 0.60 -2.1 1,966,900 - AMB_RS23355 0.60 -0.9 1,967,019 + AMB_RS23355 0.67 -0.2 1,967,020 - AMB_RS23355 0.67 -1.4 1,967,020 - AMB_RS23355 0.67 +0.4 1,967,037 - AMB_RS23355 0.68 -0.7 1,967,093 + AMB_RS23355 0.72 +4.2 1,967,093 + AMB_RS23355 0.72 -0.9 1,967,094 - AMB_RS23355 0.72 -0.1 1,967,094 - AMB_RS23355 0.72 +0.7 1,967,376 + AMB_RS23355 0.90 +0.4 1,967,377 - AMB_RS23355 0.90 -3.6 1,967,377 - AMB_RS23355 0.90 +0.4 1,967,385 - -0.2 1,967,683 + AMB_RS09245 0.13 -2.8 1,967,683 + AMB_RS09245 0.13 -2.0 1,967,683 + AMB_RS09245 0.13 +0.4 1,967,828 + AMB_RS09245 0.48 -1.8 1,967,828 + AMB_RS09245 0.48 +0.3 1,967,828 + AMB_RS09245 0.48 +0.1 1,967,829 - AMB_RS09245 0.48 -0.5 1,967,829 - AMB_RS09245 0.48 -0.5 1,967,831 + AMB_RS09245 0.49 -1.2 1,967,832 - AMB_RS09245 0.49 +0.1 1,967,861 + AMB_RS09245 0.56 +0.0 1,968,055 + -0.6 1,968,055 + -0.5 1,968,055 + -0.2 1,968,056 - -0.2 1,968,056 - +0.2 1,968,056 - +0.4 1,968,649 + AMB_RS09255 0.21 -0.6 1,968,649 + AMB_RS09255 0.21 -1.2 1,968,662 + AMB_RS09255 0.24 -1.3 1,968,662 + AMB_RS09255 0.24 -1.6 1,968,662 + AMB_RS09255 0.24 -0.5 1,968,662 + AMB_RS09255 0.24 -3.9 1,968,662 + AMB_RS09255 0.24 -1.2 1,968,662 + AMB_RS09255 0.24 -1.6 1,968,663 - AMB_RS09255 0.24 +0.1 1,968,663 - AMB_RS09255 0.24 -0.9 1,968,664 + AMB_RS09255 0.24 +0.4 1,968,665 - AMB_RS09255 0.24 -0.9 1,968,944 + AMB_RS09255 0.85 -2.1 1,968,944 + AMB_RS09255 0.85 -1.9 1,968,945 - AMB_RS09255 0.85 -0.5
Or see this region's nucleotide sequence