Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09145

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09140 and AMB_RS09145 are separated by 46 nucleotidesAMB_RS09145 and AMB_RS09150 overlap by 4 nucleotidesAMB_RS09150 and AMB_RS09155 are separated by 87 nucleotides AMB_RS09140: AMB_RS09140 - methyl-accepting chemotaxis protein, at 1,945,477 to 1,947,156 _RS09140 AMB_RS09145: AMB_RS09145 - copper-translocating P-type ATPase, at 1,947,203 to 1,949,410 _RS09145 AMB_RS09150: AMB_RS09150 - Cu(I)-responsive transcriptional regulator, at 1,949,407 to 1,949,799 _RS09150 AMB_RS09155: AMB_RS09155 - divergent polysaccharide deacetylase family protein, at 1,949,887 to 1,950,987 _RS09155 Position (kb) 1947 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1at 1949.412 kb on + strandat 1949.461 kb on + strand, within AMB_RS09150at 1949.462 kb on - strand, within AMB_RS09150at 1949.522 kb on - strand, within AMB_RS09150at 1949.523 kb on + strand, within AMB_RS09150at 1949.827 kb on + strandat 1949.827 kb on + strandat 1949.827 kb on + strandat 1949.859 kb on + strandat 1950.406 kb on + strand, within AMB_RS09155at 1950.406 kb on + strand, within AMB_RS09155at 1950.407 kb on - strand, within AMB_RS09155at 1950.407 kb on - strand, within AMB_RS09155at 1950.407 kb on - strand, within AMB_RS09155at 1950.407 kb on - strand, within AMB_RS09155at 1950.407 kb on - strand, within AMB_RS09155

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,949,412 + -0.2
1,949,461 + AMB_RS09150 0.14 -1.8
1,949,462 - AMB_RS09150 0.14 -1.4
1,949,522 - AMB_RS09150 0.29 +0.2
1,949,523 + AMB_RS09150 0.30 +0.8
1,949,827 + -0.4
1,949,827 + +1.2
1,949,827 + -0.6
1,949,859 + +0.9
1,950,406 + AMB_RS09155 0.47 -0.8
1,950,406 + AMB_RS09155 0.47 -0.3
1,950,407 - AMB_RS09155 0.47 -1.9
1,950,407 - AMB_RS09155 0.47 -0.6
1,950,407 - AMB_RS09155 0.47 -0.4
1,950,407 - AMB_RS09155 0.47 +0.4
1,950,407 - AMB_RS09155 0.47 -1.2

Or see this region's nucleotide sequence