Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08505

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
1,819,189	+				-1.8
1,819,223	+		AMB_RS08500	0.12	-0.9
1,819,223	+		AMB_RS08500	0.12	-1.3
1,819,224	-		AMB_RS08500	0.12	-0.3
1,819,224	-		AMB_RS08500	0.12	+0.0
1,819,224	-		AMB_RS08500	0.12	-0.2
1,819,224	-		AMB_RS08500	0.12	+1.4
1,819,224	-		AMB_RS08500	0.12	-1.2
1,819,225	+		AMB_RS08500	0.12	-2.3
1,819,226	-		AMB_RS08500	0.12	-1.0
1,819,226	-		AMB_RS08500	0.12	-1.0
1,819,226	-		AMB_RS08500	0.12	-1.5
1,819,226	-		AMB_RS08500	0.12	-0.5
1,819,226	-		AMB_RS08500	0.12	-0.2
1,819,336	+		AMB_RS08500	0.26	+0.4
1,819,336	+		AMB_RS08500	0.26	+0.1
1,819,337	-		AMB_RS08500	0.26	-0.6
1,819,337	-		AMB_RS08500	0.26	-1.8
1,820,052	+				-1.2
1,820,105	+				-0.3
1,820,106	-				-0.2
1,820,107	+				-2.1
1,820,108	-				-1.4
1,820,108	-				-0.4
1,820,108	-				+0.4
1,820,108	-				-0.9
1,820,108	-				-0.6
1,820,108	-				-2.2
1,820,109	+				-1.6
1,820,109	+				-0.6
1,820,109	+				-0.0
1,820,110	-				+0.6
1,820,110	-				-0.5
1,820,205	+				+0.8
1,820,205	+				+0.1
1,820,206	-				-0.6
1,820,357	+				+0.6
1,820,357	+				-0.6
1,820,357	+				+1.1
1,820,357	+				-2.1
1,820,357	+				-1.3
1,820,358	-				-2.1
1,820,358	-				-1.9
1,820,358	-				+0.2
1,820,358	-				+1.0
1,820,358	-				-1.4
1,820,431	+				+0.3
1,820,431	+				+0.8
1,820,431	+				+0.7
1,820,432	-				-1.8
1,820,527	+		AMB_RS08505	0.13	-0.2
1,820,527	+		AMB_RS08505	0.13	-2.8
1,820,527	+		AMB_RS08505	0.13	+0.6
1,820,527	+		AMB_RS08505	0.13	+0.1
1,820,527	+		AMB_RS08505	0.13	+0.8
1,820,527	+		AMB_RS08505	0.13	-0.8
1,820,527	+		AMB_RS08505	0.13	+0.9
1,820,527	+		AMB_RS08505	0.13	-2.2
1,820,528	-		AMB_RS08505	0.13	+0.3
1,820,528	-		AMB_RS08505	0.13	-2.2
1,820,528	-		AMB_RS08505	0.13	+1.4
1,820,528	-		AMB_RS08505	0.13	-0.0
1,820,528	-		AMB_RS08505	0.13	-0.6
1,820,533	+		AMB_RS08505	0.14	-1.6
1,820,534	-		AMB_RS08505	0.14	-0.2
1,820,534	-		AMB_RS08505	0.14	-0.2
1,820,534	-		AMB_RS08505	0.14	+0.9
1,820,534	-		AMB_RS08505	0.14	+0.7
1,820,534	-		AMB_RS08505	0.14	+0.8
1,820,534	-		AMB_RS08505	0.14	+0.5
1,820,545	+		AMB_RS08505	0.14	+0.5
1,820,545	+		AMB_RS08505	0.14	-0.9
1,820,546	-		AMB_RS08505	0.14	+0.4
1,820,546	-		AMB_RS08505	0.14	-1.8
1,820,717	-		AMB_RS08505	0.21	-1.4
1,820,755	+		AMB_RS08505	0.22	+0.3
1,820,755	+		AMB_RS08505	0.22	-1.8
1,820,755	+		AMB_RS08505	0.22	+0.4
1,820,755	+		AMB_RS08505	0.22	-1.2
1,820,755	+		AMB_RS08505	0.22	-0.1
1,820,755	+		AMB_RS08505	0.22	-1.4
1,820,756	-		AMB_RS08505	0.22	+0.2
1,820,756	-		AMB_RS08505	0.22	-1.2
1,820,756	-		AMB_RS08505	0.22	-2.8
1,820,756	-		AMB_RS08505	0.22	-1.6
1,820,756	-		AMB_RS08505	0.22	-0.2
1,820,756	-		AMB_RS08505	0.22	-0.6
1,820,756	-		AMB_RS08505	0.22	-0.3
1,820,806	+		AMB_RS08505	0.24	+0.3
1,820,806	+		AMB_RS08505	0.24	+0.3
1,820,833	+		AMB_RS08505	0.25	+0.1
1,820,833	+		AMB_RS08505	0.25	-2.2
1,820,833	+		AMB_RS08505	0.25	-2.5
1,820,833	+		AMB_RS08505	0.25	-0.2
1,820,834	-		AMB_RS08505	0.25	-1.6
1,820,851	+		AMB_RS08505	0.26	-0.1
1,820,851	+		AMB_RS08505	0.26	-1.2
1,820,852	-		AMB_RS08505	0.26	+0.1
1,820,852	-		AMB_RS08505	0.26	-1.2
1,820,852	-		AMB_RS08505	0.26	-0.9
1,820,941	+		AMB_RS08505	0.29	+0.7
1,820,942	-		AMB_RS08505	0.29	-0.5
1,820,971	+		AMB_RS08505	0.30	-1.2
1,820,971	+		AMB_RS08505	0.30	-1.6
1,821,091	+		AMB_RS08505	0.35	-0.5
1,821,091	+		AMB_RS08505	0.35	-1.6
1,821,092	-		AMB_RS08505	0.35	-3.0
1,821,092	-		AMB_RS08505	0.35	-1.3
1,821,092	-		AMB_RS08505	0.35	-0.9
1,821,092	-		AMB_RS08505	0.35	-0.0
1,821,093	-		AMB_RS08505	0.35	-0.7
1,821,094	+		AMB_RS08505	0.35	-0.4
1,821,094	+		AMB_RS08505	0.35	-0.6
1,821,094	+		AMB_RS08505	0.35	+0.9
1,821,095	-		AMB_RS08505	0.35	+0.3
1,821,095	-		AMB_RS08505	0.35	+2.0
1,821,095	-		AMB_RS08505	0.35	+0.3
1,821,175	+		AMB_RS08505	0.38	-0.9
1,821,176	-		AMB_RS08505	0.38	-1.2
1,821,176	-		AMB_RS08505	0.38	-0.9
1,821,176	-		AMB_RS08505	0.38	-0.6
1,821,176	-		AMB_RS08505	0.38	-2.2
1,821,313	+		AMB_RS08505	0.43	-3.0
1,821,313	+		AMB_RS08505	0.43	+0.1
1,821,314	-		AMB_RS08505	0.43	-0.0
1,821,314	-		AMB_RS08505	0.43	-0.1
1,821,314	-		AMB_RS08505	0.43	+0.7
1,821,314	-		AMB_RS08505	0.43	-0.5
1,821,314	-		AMB_RS08505	0.43	+0.4
1,821,403	+		AMB_RS08505	0.47	+2.4
1,821,403	+		AMB_RS08505	0.47	-2.4
1,821,403	+		AMB_RS08505	0.47	+0.7
1,821,403	+		AMB_RS08505	0.47	-3.1
1,821,403	+		AMB_RS08505	0.47	-0.6
1,821,404	-		AMB_RS08505	0.47	-0.2
1,821,404	-		AMB_RS08505	0.47	-2.5
1,821,404	-		AMB_RS08505	0.47	-0.8
1,821,404	-		AMB_RS08505	0.47	-0.5
1,821,404	-		AMB_RS08505	0.47	+2.6
1,821,404	-		AMB_RS08505	0.47	-1.2
1,821,404	-		AMB_RS08505	0.47	-2.3
1,821,404	-		AMB_RS08505	0.47	+0.2
1,821,404	-		AMB_RS08505	0.47	+0.8
1,821,488	-		AMB_RS08505	0.50	-0.6
1,821,634	+		AMB_RS08505	0.56	-1.8
1,821,634	+		AMB_RS08505	0.56	-0.9
1,821,635	-		AMB_RS08505	0.56	-1.9
1,821,659	-		AMB_RS08505	0.57	-0.7
1,821,769	+		AMB_RS08505	0.61	-1.6
1,821,769	+		AMB_RS08505	0.61	-3.1
1,821,769	+		AMB_RS08505	0.61	-0.2
1,821,770	-		AMB_RS08505	0.61	-2.8
1,821,770	-		AMB_RS08505	0.61	+0.3
1,821,770	-		AMB_RS08505	0.61	-0.2
1,821,770	-		AMB_RS08505	0.61	-3.2
1,821,893	-		AMB_RS08505	0.66	-1.4
1,821,940	+		AMB_RS08505	0.67	+0.9
1,821,940	+		AMB_RS08505	0.67	+0.4
1,821,941	-		AMB_RS08505	0.67	+0.2
1,821,968	+		AMB_RS08505	0.68	-0.9
1,821,969	-		AMB_RS08505	0.68	-1.6
1,821,969	-		AMB_RS08505	0.68	-2.8
1,821,969	-		AMB_RS08505	0.68	-0.2
1,822,176	+		AMB_RS08505	0.76	-1.9
1,822,176	+		AMB_RS08505	0.76	+0.8
1,822,176	+		AMB_RS08505	0.76	-0.2
1,822,176	+		AMB_RS08505	0.76	-0.4
1,822,176	+		AMB_RS08505	0.76	+0.7
1,822,176	+		AMB_RS08505	0.76	+0.1
1,822,176	+		AMB_RS08505	0.76	+0.7
1,822,176	+		AMB_RS08505	0.76	+0.3
1,822,177	-		AMB_RS08505	0.76	-1.0
1,822,177	-		AMB_RS08505	0.76	+0.5
1,822,177	-		AMB_RS08505	0.76	+1.4
1,822,177	-		AMB_RS08505	0.76	+0.8
1,822,279	+		AMB_RS08505	0.80	-1.8
1,822,415	-		AMB_RS08505	0.85	-0.8
1,822,546	+				-2.6
1,822,592	-				+0.4
1,822,592	-				-1.9
1,822,598	-				-1.8
1,822,687	+				-1.2
1,822,689	+				-0.6
1,822,690	-				-0.2
1,822,737	+				+0.4
1,822,737	+				-1.1
1,822,738	-				-0.3
1,822,738	-				+0.1
1,822,768	+				-0.3
1,822,769	-				-2.4
1,822,769	-				-2.1
1,822,769	-				-2.2
1,822,789	+				-0.3
1,822,789	+				-1.2
1,822,790	-				-0.2
1,822,793	-				-0.6
1,822,972	+				-1.0
1,822,972	+				-1.0