Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08375

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08370 and AMB_RS08375 are separated by 417 nucleotidesAMB_RS08375 and AMB_RS08380 are separated by 39 nucleotides AMB_RS08370: AMB_RS08370 - MFS transporter, at 1,791,211 to 1,792,548 _RS08370 AMB_RS08375: AMB_RS08375 - hypothetical protein, at 1,792,966 to 1,794,348 _RS08375 AMB_RS08380: AMB_RS08380 - sigma-54-dependent Fis family transcriptional regulator, at 1,794,388 to 1,795,725 _RS08380 Position (kb) 1792 1793 1794 1795Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1792.031 kb on + strand, within AMB_RS08370at 1792.032 kb on - strand, within AMB_RS08370at 1792.046 kb on + strand, within AMB_RS08370at 1792.046 kb on + strand, within AMB_RS08370at 1792.047 kb on - strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.103 kb on + strand, within AMB_RS08370at 1792.377 kb on - strand, within AMB_RS08370at 1792.388 kb on + strand, within AMB_RS08370at 1792.406 kb on + strand, within AMB_RS08370at 1792.412 kb on + strand, within AMB_RS08370at 1792.413 kb on - strand, within AMB_RS08370at 1792.413 kb on - strand, within AMB_RS08370at 1792.421 kb on + strandat 1792.425 kb on - strandat 1792.542 kb on + strandat 1792.543 kb on - strandat 1792.928 kb on + strandat 1792.928 kb on + strandat 1792.964 kb on + strandat 1792.964 kb on + strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1793.047 kb on - strandat 1793.101 kb on + strandat 1793.101 kb on + strandat 1793.102 kb on - strandat 1793.102 kb on - strandat 1793.104 kb on + strandat 1793.104 kb on + strandat 1793.104 kb on + strandat 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.120 kb on - strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.625 kb on + strand, within AMB_RS08375at 1793.626 kb on - strand, within AMB_RS08375at 1793.671 kb on + strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.971 kb on + strand, within AMB_RS08375at 1793.971 kb on + strand, within AMB_RS08375at 1793.972 kb on - strand, within AMB_RS08375at 1793.972 kb on - strand, within AMB_RS08375at 1793.973 kb on + strand, within AMB_RS08375at 1793.973 kb on + strand, within AMB_RS08375at 1793.974 kb on - strand, within AMB_RS08375at 1794.157 kb on + strand, within AMB_RS08375at 1794.158 kb on - strand, within AMB_RS08375at 1794.158 kb on - strand, within AMB_RS08375at 1794.310 kb on + strandat 1794.311 kb on - strandat 1794.311 kb on - strandat 1794.337 kb on - strandat 1794.340 kb on - strandat 1794.419 kb on + strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.821 kb on + strand, within AMB_RS08380at 1794.821 kb on + strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,792,031 + AMB_RS08370 0.61 -2.7
1,792,032 - AMB_RS08370 0.61 -1.1
1,792,046 + AMB_RS08370 0.62 -1.2
1,792,046 + AMB_RS08370 0.62 +0.1
1,792,047 - AMB_RS08370 0.62 +0.0
1,792,085 + AMB_RS08370 0.65 -0.4
1,792,085 + AMB_RS08370 0.65 +0.4
1,792,085 + AMB_RS08370 0.65 -0.9
1,792,085 + AMB_RS08370 0.65 -1.6
1,792,085 + AMB_RS08370 0.65 -1.5
1,792,085 + AMB_RS08370 0.65 +0.4
1,792,085 + AMB_RS08370 0.65 +0.2
1,792,086 - AMB_RS08370 0.65 +0.4
1,792,086 - AMB_RS08370 0.65 -0.9
1,792,086 - AMB_RS08370 0.65 -0.9
1,792,086 - AMB_RS08370 0.65 -0.6
1,792,086 - AMB_RS08370 0.65 -3.9
1,792,086 - AMB_RS08370 0.65 -0.1
1,792,103 + AMB_RS08370 0.67 -0.3
1,792,377 - AMB_RS08370 0.87 -0.4
1,792,388 + AMB_RS08370 0.88 -0.6
1,792,406 + AMB_RS08370 0.89 -1.7
1,792,412 + AMB_RS08370 0.90 -0.6
1,792,413 - AMB_RS08370 0.90 -0.6
1,792,413 - AMB_RS08370 0.90 -0.6
1,792,421 + -0.6
1,792,425 - -3.2
1,792,542 + +0.2
1,792,543 - -0.5
1,792,928 + -2.7
1,792,928 + -0.1
1,792,964 + +0.2
1,792,964 + +0.6
1,792,965 - -0.4
1,792,965 - +1.4
1,792,965 - -0.6
1,792,965 - -0.0
1,793,047 - -0.6
1,793,101 + -0.2
1,793,101 + -1.0
1,793,102 - +1.7
1,793,102 - -0.5
1,793,104 + -2.5
1,793,104 + -1.6
1,793,104 + +0.1
1,793,105 - AMB_RS08375 0.10 -1.2
1,793,105 - AMB_RS08375 0.10 -1.6
1,793,105 - AMB_RS08375 0.10 -1.4
1,793,105 - AMB_RS08375 0.10 -0.5
1,793,119 + AMB_RS08375 0.11 -0.6
1,793,119 + AMB_RS08375 0.11 -0.0
1,793,119 + AMB_RS08375 0.11 -0.6
1,793,119 + AMB_RS08375 0.11 -0.9
1,793,119 + AMB_RS08375 0.11 +0.4
1,793,120 - AMB_RS08375 0.11 -2.9
1,793,407 + AMB_RS08375 0.32 -1.9
1,793,407 + AMB_RS08375 0.32 -0.9
1,793,407 + AMB_RS08375 0.32 +0.1
1,793,408 - AMB_RS08375 0.32 -0.2
1,793,408 - AMB_RS08375 0.32 -0.2
1,793,408 - AMB_RS08375 0.32 -1.9
1,793,408 - AMB_RS08375 0.32 -1.4
1,793,408 - AMB_RS08375 0.32 -0.6
1,793,461 + AMB_RS08375 0.36 -0.1
1,793,461 + AMB_RS08375 0.36 +0.5
1,793,461 + AMB_RS08375 0.36 -0.1
1,793,494 + AMB_RS08375 0.38 +3.4
1,793,494 + AMB_RS08375 0.38 +1.6
1,793,495 - AMB_RS08375 0.38 +0.3
1,793,495 - AMB_RS08375 0.38 +0.4
1,793,495 - AMB_RS08375 0.38 -1.4
1,793,495 - AMB_RS08375 0.38 +0.1
1,793,623 + AMB_RS08375 0.48 -0.4
1,793,623 + AMB_RS08375 0.48 -0.2
1,793,623 + AMB_RS08375 0.48 -1.7
1,793,623 + AMB_RS08375 0.48 -0.9
1,793,623 + AMB_RS08375 0.48 -0.7
1,793,623 + AMB_RS08375 0.48 +0.4
1,793,623 + AMB_RS08375 0.48 -1.0
1,793,623 + AMB_RS08375 0.48 -2.1
1,793,623 + AMB_RS08375 0.48 -1.6
1,793,623 + AMB_RS08375 0.48 -0.1
1,793,623 + AMB_RS08375 0.48 +0.4
1,793,623 + AMB_RS08375 0.48 +0.1
1,793,624 - AMB_RS08375 0.48 -1.9
1,793,624 - AMB_RS08375 0.48 -1.8
1,793,624 - AMB_RS08375 0.48 +0.2
1,793,624 - AMB_RS08375 0.48 +0.2
1,793,624 - AMB_RS08375 0.48 -0.1
1,793,624 - AMB_RS08375 0.48 -0.6
1,793,624 - AMB_RS08375 0.48 +1.7
1,793,624 - AMB_RS08375 0.48 +0.2
1,793,624 - AMB_RS08375 0.48 -1.6
1,793,624 - AMB_RS08375 0.48 +0.5
1,793,624 - AMB_RS08375 0.48 -0.2
1,793,624 - AMB_RS08375 0.48 -0.9
1,793,625 + AMB_RS08375 0.48 -2.2
1,793,626 - AMB_RS08375 0.48 +2.6
1,793,671 + AMB_RS08375 0.51 -4.2
1,793,672 - AMB_RS08375 0.51 -2.9
1,793,672 - AMB_RS08375 0.51 -1.2
1,793,672 - AMB_RS08375 0.51 -1.1
1,793,672 - AMB_RS08375 0.51 -0.9
1,793,672 - AMB_RS08375 0.51 -0.9
1,793,883 + AMB_RS08375 0.66 -0.8
1,793,883 + AMB_RS08375 0.66 +1.4
1,793,883 + AMB_RS08375 0.66 -2.2
1,793,883 + AMB_RS08375 0.66 -0.3
1,793,884 - AMB_RS08375 0.66 -4.1
1,793,884 - AMB_RS08375 0.66 +0.1
1,793,884 - AMB_RS08375 0.66 -0.5
1,793,884 - AMB_RS08375 0.66 +1.2
1,793,884 - AMB_RS08375 0.66 -1.2
1,793,887 + AMB_RS08375 0.67 -2.1
1,793,887 + AMB_RS08375 0.67 -0.2
1,793,887 + AMB_RS08375 0.67 +1.1
1,793,887 + AMB_RS08375 0.67 -0.2
1,793,887 + AMB_RS08375 0.67 -0.9
1,793,887 + AMB_RS08375 0.67 -2.5
1,793,888 - AMB_RS08375 0.67 -0.3
1,793,888 - AMB_RS08375 0.67 +0.6
1,793,888 - AMB_RS08375 0.67 -1.6
1,793,888 - AMB_RS08375 0.67 +1.4
1,793,888 - AMB_RS08375 0.67 -0.9
1,793,971 + AMB_RS08375 0.73 -0.4
1,793,971 + AMB_RS08375 0.73 -0.4
1,793,972 - AMB_RS08375 0.73 -1.5
1,793,972 - AMB_RS08375 0.73 +0.3
1,793,973 + AMB_RS08375 0.73 -1.0
1,793,973 + AMB_RS08375 0.73 +1.4
1,793,974 - AMB_RS08375 0.73 -0.4
1,794,157 + AMB_RS08375 0.86 +2.1
1,794,158 - AMB_RS08375 0.86 -2.2
1,794,158 - AMB_RS08375 0.86 +0.4
1,794,310 + -2.9
1,794,311 - -0.9
1,794,311 - -0.2
1,794,337 - -0.0
1,794,340 - -0.2
1,794,419 + -1.9
1,794,420 - -1.6
1,794,420 - +0.1
1,794,420 - +0.5
1,794,420 - -4.4
1,794,420 - -0.1
1,794,821 + AMB_RS08380 0.32 -0.2
1,794,821 + AMB_RS08380 0.32 +0.5
1,794,822 - AMB_RS08380 0.32 -2.4
1,794,822 - AMB_RS08380 0.32 -0.1
1,794,822 - AMB_RS08380 0.32 -0.7
1,794,822 - AMB_RS08380 0.32 +1.4

Or see this region's nucleotide sequence