Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08340

Experiment: 30_an_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_2
1,784,406	+		AMB_RS08335	0.43	-2.4
1,784,407	-		AMB_RS08335	0.43	-0.0
1,784,436	+		AMB_RS08335	0.45	-0.0
1,784,436	+		AMB_RS08335	0.45	-0.8
1,784,436	+		AMB_RS08335	0.45	-1.8
1,784,437	-		AMB_RS08335	0.45	+0.3
1,784,437	-		AMB_RS08335	0.45	-1.0
1,784,437	-		AMB_RS08335	0.45	-0.4
1,784,463	+		AMB_RS08335	0.47	+0.4
1,784,463	+		AMB_RS08335	0.47	-1.7
1,784,463	+		AMB_RS08335	0.47	-0.6
1,784,526	+		AMB_RS08335	0.50	-1.4
1,784,526	+		AMB_RS08335	0.50	+0.2
1,784,526	+		AMB_RS08335	0.50	-0.9
1,784,526	+		AMB_RS08335	0.50	-0.0
1,784,526	+		AMB_RS08335	0.50	-2.4
1,784,526	+		AMB_RS08335	0.50	+0.8
1,784,526	+		AMB_RS08335	0.50	-1.6
1,784,526	+		AMB_RS08335	0.50	-0.7
1,784,527	-		AMB_RS08335	0.50	-1.9
1,784,527	-		AMB_RS08335	0.50	-1.6
1,784,527	-		AMB_RS08335	0.50	-0.9
1,784,527	-		AMB_RS08335	0.50	-0.4
1,784,527	-		AMB_RS08335	0.50	-0.1
1,784,527	-		AMB_RS08335	0.50	-0.5
1,784,527	-		AMB_RS08335	0.50	-0.5
1,784,547	+		AMB_RS08335	0.52	-0.6
1,784,547	+		AMB_RS08335	0.52	-0.6
1,784,547	+		AMB_RS08335	0.52	+0.1
1,784,548	-		AMB_RS08335	0.52	-1.8
1,784,548	-		AMB_RS08335	0.52	+0.4
1,784,565	+		AMB_RS08335	0.53	-0.0
1,784,565	+		AMB_RS08335	0.53	-1.6
1,784,565	+		AMB_RS08335	0.53	-1.1
1,784,598	+		AMB_RS08335	0.55	-1.2
1,784,598	+		AMB_RS08335	0.55	-1.3
1,784,598	+		AMB_RS08335	0.55	+2.0
1,784,598	+		AMB_RS08335	0.55	-0.7
1,784,599	-		AMB_RS08335	0.55	-1.2
1,784,599	-		AMB_RS08335	0.55	-1.4
1,784,799	+		AMB_RS08335	0.66	-0.3
1,784,799	+		AMB_RS08335	0.66	+0.0
1,784,800	-		AMB_RS08335	0.66	-0.3
1,785,045	+		AMB_RS08335	0.81	-0.9
1,785,045	+		AMB_RS08335	0.81	-1.0
1,785,046	-		AMB_RS08335	0.81	-1.4
1,785,046	-		AMB_RS08335	0.81	-0.9
1,785,046	-		AMB_RS08335	0.81	-0.1
1,785,385	+				-0.1
1,785,385	+				-0.0
1,785,446	+				-0.3
1,785,446	+				-0.2
1,785,447	-				-2.7
1,785,448	+				-0.6
1,785,448	+				+0.4
1,785,448	+				-0.2
1,785,448	+				-0.6
1,785,448	+				-0.2
1,785,448	+				-1.5
1,785,448	+				-1.6
1,785,448	+				+1.0
1,785,448	+				+1.2
1,785,449	-				-0.6
1,785,449	-				-2.3
1,785,449	-				+0.2
1,785,449	-				+0.5
1,785,511	+		AMB_RS08340	0.11	-2.2
1,785,511	+		AMB_RS08340	0.11	+1.3
1,785,512	-		AMB_RS08340	0.11	+0.1
1,785,512	-		AMB_RS08340	0.11	-1.6
1,785,512	-		AMB_RS08340	0.11	-1.4
1,785,535	+		AMB_RS08340	0.13	+0.1
1,785,535	+		AMB_RS08340	0.13	-0.2
1,785,535	+		AMB_RS08340	0.13	-0.0
1,785,535	+		AMB_RS08340	0.13	-0.6
1,785,536	-		AMB_RS08340	0.13	-1.9
1,785,536	-		AMB_RS08340	0.13	-0.6
1,785,536	-		AMB_RS08340	0.13	-0.0
1,785,562	+		AMB_RS08340	0.15	-0.3
1,785,563	-		AMB_RS08340	0.15	-1.1
1,785,655	+		AMB_RS08340	0.22	-0.5
1,785,763	+		AMB_RS08340	0.31	+0.4
1,785,763	+		AMB_RS08340	0.31	-0.3
1,785,763	+		AMB_RS08340	0.31	+0.3
1,785,763	+		AMB_RS08340	0.31	+0.3
1,785,763	+		AMB_RS08340	0.31	+0.7
1,785,764	-		AMB_RS08340	0.32	-0.6
1,785,764	-		AMB_RS08340	0.32	+1.4
1,785,764	-		AMB_RS08340	0.32	-1.9
1,786,120	+		AMB_RS08340	0.61	-0.9
1,786,120	+		AMB_RS08340	0.61	-0.1
1,786,120	+		AMB_RS08340	0.61	-1.3
1,786,120	+		AMB_RS08340	0.61	-3.1
1,786,120	+		AMB_RS08340	0.61	-0.1
1,786,120	+		AMB_RS08340	0.61	+0.4
1,786,121	-		AMB_RS08340	0.61	-0.6
1,786,121	-		AMB_RS08340	0.61	+0.4
1,786,121	-		AMB_RS08340	0.61	-0.5
1,786,171	+		AMB_RS08340	0.65	-0.8
1,786,171	+		AMB_RS08340	0.65	-0.8
1,786,172	-		AMB_RS08340	0.65	-2.6
1,786,172	-		AMB_RS08340	0.65	-0.9
1,786,247	-		AMB_RS08340	0.72	-1.9
1,786,291	+		AMB_RS08340	0.75	-1.9
1,786,312	+		AMB_RS08340	0.77	-0.4
1,786,312	+		AMB_RS08340	0.77	+3.9
1,786,312	+		AMB_RS08340	0.77	+0.4
1,786,312	+		AMB_RS08340	0.77	+0.1
1,786,312	+		AMB_RS08340	0.77	+1.4
1,786,313	-		AMB_RS08340	0.77	+0.0
1,786,313	-		AMB_RS08340	0.77	-2.2
1,786,313	-		AMB_RS08340	0.77	-0.8
1,786,313	-		AMB_RS08340	0.77	+0.4
1,786,385	+		AMB_RS08340	0.83	+0.6
1,786,386	-		AMB_RS08340	0.83	+0.5
1,786,386	-		AMB_RS08340	0.83	-1.2
1,786,432	+		AMB_RS08340	0.87	+2.4
1,786,433	-		AMB_RS08340	0.87	-0.9
1,786,590	+				+0.4
1,786,590	+				-2.0
1,786,590	+				+0.5
1,786,590	+				-1.8
1,786,590	+				+0.4
1,786,590	+				-0.8
1,786,590	+				+0.2
1,786,590	+				-1.6
1,786,591	-				-0.2
1,786,591	-				-1.4
1,786,591	-				-0.7
1,786,591	-				-0.9
1,786,591	-				-0.6
1,786,591	-				+0.2
1,786,716	+		AMB_RS08345	0.12	-1.3
1,786,717	-		AMB_RS08345	0.13	-1.8
1,786,752	+		AMB_RS08345	0.16	-1.3
1,786,753	-		AMB_RS08345	0.16	-0.8
1,786,813	-		AMB_RS08345	0.22	-0.6
1,786,849	-		AMB_RS08345	0.25	-0.8
1,786,854	+		AMB_RS08345	0.26	-1.7
1,786,854	+		AMB_RS08345	0.26	-1.5
1,786,854	+		AMB_RS08345	0.26	-0.6
1,786,854	+		AMB_RS08345	0.26	-3.4
1,786,854	+		AMB_RS08345	0.26	+0.4
1,786,854	+		AMB_RS08345	0.26	+0.4
1,786,854	+		AMB_RS08345	0.26	-2.4
1,786,855	-		AMB_RS08345	0.26	-0.9
1,786,855	-		AMB_RS08345	0.26	-1.5
1,786,855	-		AMB_RS08345	0.26	-0.7
1,786,855	-		AMB_RS08345	0.26	-0.2
1,786,855	-		AMB_RS08345	0.26	+0.4
1,786,855	-		AMB_RS08345	0.26	+0.1
1,786,855	-		AMB_RS08345	0.26	-1.4
1,786,855	-		AMB_RS08345	0.26	+2.0
1,786,863	+		AMB_RS08345	0.27	-0.6
1,786,864	-		AMB_RS08345	0.27	-0.9
1,786,864	-		AMB_RS08345	0.27	-0.9
1,786,864	-		AMB_RS08345	0.27	-1.0
1,786,980	+		AMB_RS08345	0.38	+0.3
1,786,980	+		AMB_RS08345	0.38	-3.4
1,786,981	-		AMB_RS08345	0.38	-1.7
1,787,031	+		AMB_RS08345	0.43	-0.9
1,787,031	+		AMB_RS08345	0.43	-0.5
1,787,032	-		AMB_RS08345	0.43	-1.9
1,787,032	-		AMB_RS08345	0.43	-0.2
1,787,032	-		AMB_RS08345	0.43	-0.5
1,787,032	-		AMB_RS08345	0.43	-0.3
1,787,032	-		AMB_RS08345	0.43	-1.2
1,787,097	+		AMB_RS08345	0.50	-0.6
1,787,098	-		AMB_RS08345	0.50	-0.9
1,787,169	+		AMB_RS08345	0.57	-0.9
1,787,169	+		AMB_RS08345	0.57	-1.4
1,787,170	-		AMB_RS08345	0.57	-1.4
1,787,170	-		AMB_RS08345	0.57	-0.5
1,787,266	+		AMB_RS08345	0.66	-0.8
1,787,266	+		AMB_RS08345	0.66	+0.5
1,787,266	+		AMB_RS08345	0.66	+1.1
1,787,319	+		AMB_RS08345	0.72	-3.0
1,787,319	+		AMB_RS08345	0.72	+0.2
1,787,319	+		AMB_RS08345	0.72	-1.6
1,787,319	+		AMB_RS08345	0.72	-0.6
1,787,320	-		AMB_RS08345	0.72	-1.8
1,787,320	-		AMB_RS08345	0.72	-1.8
1,787,337	+		AMB_RS08345	0.73	-0.3
1,787,337	+		AMB_RS08345	0.73	-0.6
1,787,337	+		AMB_RS08345	0.73	-0.2
1,787,337	+		AMB_RS08345	0.73	-0.1
1,787,338	-		AMB_RS08345	0.73	-0.2
1,787,338	-		AMB_RS08345	0.73	-1.8
1,787,338	-		AMB_RS08345	0.73	+0.2
1,787,338	-		AMB_RS08345	0.73	+1.0
1,787,467	-		AMB_RS08345	0.86	-2.2
1,787,467	-		AMB_RS08345	0.86	-0.1
1,787,467	-		AMB_RS08345	0.86	-1.6
1,787,498	-		AMB_RS08345	0.89	-1.6