Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08155

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08150 and AMB_RS08155 are separated by 59 nucleotidesAMB_RS08155 and AMB_RS08160 are separated by 114 nucleotides AMB_RS08150: AMB_RS08150 - phosphoenolpyruvate--protein phosphotransferase, at 1,740,274 to 1,742,547 _RS08150 AMB_RS08155: AMB_RS08155 - DUF4115 domain-containing protein, at 1,742,607 to 1,743,911 _RS08155 AMB_RS08160: AMB_RS08160 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,744,026 to 1,745,138 _RS08160 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -3 -2 -1 0 1at 1741.861 kb on + strand, within AMB_RS08150at 1742.462 kb on - strandat 1743.513 kb on - strand, within AMB_RS08155at 1743.631 kb on - strand, within AMB_RS08155at 1743.959 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,741,861 + AMB_RS08150 0.70 -1.2
1,742,462 - -1.0
1,743,513 - AMB_RS08155 0.69 -1.2
1,743,631 - AMB_RS08155 0.78 -3.0
1,743,959 + -2.4

Or see this region's nucleotide sequence