Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07965

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS24275 and AMB_RS07960 are separated by 236 nucleotidesAMB_RS07960 and AMB_RS07965 are separated by 32 nucleotidesAMB_RS07965 and AMB_RS07970 are separated by 5 nucleotidesAMB_RS07970 and AMB_RS07975 overlap by 4 nucleotidesAMB_RS07975 and AMB_RS07980 are separated by 80 nucleotidesAMB_RS07980 and AMB_RS07985 are separated by 20 nucleotides AMB_RS24275: AMB_RS24275 - methyl-accepting chemotaxis protein, at 1,707,396 to 1,709,417 _RS24275 AMB_RS07960: AMB_RS07960 - ferredoxin, at 1,709,654 to 1,710,037 _RS07960 AMB_RS07965: AMB_RS07965 - SIR2 family protein, at 1,710,070 to 1,710,942 _RS07965 AMB_RS07970: AMB_RS07970 - putative nitrogen fixation protein NifT, at 1,710,948 to 1,711,163 _RS07970 AMB_RS07975: AMB_RS07975 - nitrogen fixation protein NifZ, at 1,711,160 to 1,711,441 _RS07975 AMB_RS07980: AMB_RS07980 - 4Fe-4S ferredoxin, at 1,711,522 to 1,711,710 _RS07980 AMB_RS07985: AMB_RS07985 - nitrogenase cofactor biosynthesis protein NifB, at 1,711,731 to 1,713,227 _RS07985 Position (kb) 1710 1711Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1709.194 kb on + strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.388 kb on - strandat 1709.388 kb on - strandat 1709.398 kb on - strandat 1709.464 kb on + strandat 1709.518 kb on - strandat 1709.523 kb on + strandat 1709.656 kb on - strandat 1709.727 kb on + strand, within AMB_RS07960at 1709.728 kb on - strand, within AMB_RS07960at 1709.985 kb on + strand, within AMB_RS07960at 1709.985 kb on + strand, within AMB_RS07960at 1710.194 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.357 kb on - strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.414 kb on - strand, within AMB_RS07965at 1710.414 kb on - strand, within AMB_RS07965at 1710.719 kb on + strand, within AMB_RS07965at 1710.742 kb on - strand, within AMB_RS07965at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.121 kb on - strand, within AMB_RS07970at 1711.121 kb on - strand, within AMB_RS07970at 1711.251 kb on + strand, within AMB_RS07975at 1711.251 kb on + strand, within AMB_RS07975at 1711.252 kb on - strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.272 kb on + strand, within AMB_RS07975at 1711.272 kb on + strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.293 kb on + strand, within AMB_RS07975at 1711.293 kb on + strand, within AMB_RS07975at 1711.294 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.616 kb on + strand, within AMB_RS07980at 1711.616 kb on + strand, within AMB_RS07980at 1711.616 kb on + strand, within AMB_RS07980at 1711.617 kb on - strand, within AMB_RS07980at 1711.617 kb on - strand, within AMB_RS07980at 1711.777 kb on + strandat 1711.804 kb on + strandat 1711.804 kb on + strandat 1711.805 kb on - strandat 1711.917 kb on + strand, within AMB_RS07985at 1711.917 kb on + strand, within AMB_RS07985at 1711.918 kb on - strand, within AMB_RS07985

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,709,194 + AMB_RS24275 0.89 +0.5
1,709,195 - AMB_RS24275 0.89 -1.0
1,709,195 - AMB_RS24275 0.89 +1.4
1,709,195 - AMB_RS24275 0.89 -2.2
1,709,388 - +0.4
1,709,388 - +1.4
1,709,398 - -0.3
1,709,464 + -0.9
1,709,518 - -1.9
1,709,523 + -0.9
1,709,656 - -2.3
1,709,727 + AMB_RS07960 0.19 -1.4
1,709,728 - AMB_RS07960 0.19 +0.4
1,709,985 + AMB_RS07960 0.86 +2.3
1,709,985 + AMB_RS07960 0.86 -0.2
1,710,194 + AMB_RS07965 0.14 -1.9
1,710,254 + AMB_RS07965 0.21 +1.4
1,710,254 + AMB_RS07965 0.21 -2.0
1,710,254 + AMB_RS07965 0.21 -1.9
1,710,254 + AMB_RS07965 0.21 -1.4
1,710,254 + AMB_RS07965 0.21 -0.9
1,710,254 + AMB_RS07965 0.21 -2.6
1,710,255 - AMB_RS07965 0.21 +0.3
1,710,255 - AMB_RS07965 0.21 -2.5
1,710,255 - AMB_RS07965 0.21 -2.4
1,710,255 - AMB_RS07965 0.21 -2.4
1,710,255 - AMB_RS07965 0.21 -0.1
1,710,356 + AMB_RS07965 0.33 +0.0
1,710,356 + AMB_RS07965 0.33 +0.5
1,710,356 + AMB_RS07965 0.33 +0.0
1,710,356 + AMB_RS07965 0.33 -1.7
1,710,356 + AMB_RS07965 0.33 -1.4
1,710,357 - AMB_RS07965 0.33 -0.2
1,710,413 + AMB_RS07965 0.39 -1.6
1,710,413 + AMB_RS07965 0.39 -0.4
1,710,413 + AMB_RS07965 0.39 -0.2
1,710,413 + AMB_RS07965 0.39 -2.2
1,710,413 + AMB_RS07965 0.39 -1.4
1,710,413 + AMB_RS07965 0.39 -0.2
1,710,413 + AMB_RS07965 0.39 -0.0
1,710,414 - AMB_RS07965 0.39 -1.1
1,710,414 - AMB_RS07965 0.39 -1.3
1,710,719 + AMB_RS07965 0.74 -1.9
1,710,742 - AMB_RS07965 0.77 +0.1
1,711,120 + AMB_RS07970 0.80 +0.5
1,711,120 + AMB_RS07970 0.80 -1.1
1,711,120 + AMB_RS07970 0.80 -0.9
1,711,120 + AMB_RS07970 0.80 -3.5
1,711,120 + AMB_RS07970 0.80 -0.4
1,711,120 + AMB_RS07970 0.80 +0.4
1,711,121 - AMB_RS07970 0.80 -0.4
1,711,121 - AMB_RS07970 0.80 -0.1
1,711,251 + AMB_RS07975 0.32 +0.3
1,711,251 + AMB_RS07975 0.32 -0.2
1,711,252 - AMB_RS07975 0.33 -0.3
1,711,257 + AMB_RS07975 0.34 -1.3
1,711,257 + AMB_RS07975 0.34 +0.9
1,711,257 + AMB_RS07975 0.34 -0.8
1,711,257 + AMB_RS07975 0.34 -0.9
1,711,257 + AMB_RS07975 0.34 +0.4
1,711,257 + AMB_RS07975 0.34 -0.6
1,711,257 + AMB_RS07975 0.34 -0.2
1,711,258 - AMB_RS07975 0.35 -1.2
1,711,258 - AMB_RS07975 0.35 -0.6
1,711,258 - AMB_RS07975 0.35 -2.5
1,711,258 - AMB_RS07975 0.35 -0.5
1,711,272 + AMB_RS07975 0.40 -1.9
1,711,272 + AMB_RS07975 0.40 -2.8
1,711,273 - AMB_RS07975 0.40 -1.9
1,711,273 - AMB_RS07975 0.40 -0.7
1,711,273 - AMB_RS07975 0.40 -2.8
1,711,293 + AMB_RS07975 0.47 -3.4
1,711,293 + AMB_RS07975 0.47 -2.0
1,711,294 - AMB_RS07975 0.48 -1.2
1,711,399 - AMB_RS07975 0.85 +0.2
1,711,399 - AMB_RS07975 0.85 -0.4
1,711,399 - AMB_RS07975 0.85 -1.2
1,711,616 + AMB_RS07980 0.50 +0.4
1,711,616 + AMB_RS07980 0.50 -1.6
1,711,616 + AMB_RS07980 0.50 +0.0
1,711,617 - AMB_RS07980 0.50 -2.2
1,711,617 - AMB_RS07980 0.50 +0.0
1,711,777 + -2.2
1,711,804 + -1.1
1,711,804 + -0.6
1,711,805 - -1.2
1,711,917 + AMB_RS07985 0.12 -1.8
1,711,917 + AMB_RS07985 0.12 -1.9
1,711,918 - AMB_RS07985 0.12 -0.5

Or see this region's nucleotide sequence