Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07960

Experiment: 30_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS24275 and AMB_RS07960 are separated by 236 nucleotidesAMB_RS07960 and AMB_RS07965 are separated by 32 nucleotidesAMB_RS07965 and AMB_RS07970 are separated by 5 nucleotides AMB_RS24275: AMB_RS24275 - methyl-accepting chemotaxis protein, at 1,707,396 to 1,709,417 _RS24275 AMB_RS07960: AMB_RS07960 - ferredoxin, at 1,709,654 to 1,710,037 _RS07960 AMB_RS07965: AMB_RS07965 - SIR2 family protein, at 1,710,070 to 1,710,942 _RS07965 AMB_RS07970: AMB_RS07970 - putative nitrogen fixation protein NifT, at 1,710,948 to 1,711,163 _RS07970 Position (kb) 1709 1710 1711Strain fitness (log2 ratio) -2 -1 0 1 2at 1708.693 kb on + strand, within AMB_RS24275at 1708.693 kb on + strand, within AMB_RS24275at 1708.694 kb on - strand, within AMB_RS24275at 1708.694 kb on - strand, within AMB_RS24275at 1709.047 kb on + strand, within AMB_RS24275at 1709.194 kb on + strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.195 kb on - strand, within AMB_RS24275at 1709.388 kb on - strandat 1709.388 kb on - strandat 1709.398 kb on - strandat 1709.464 kb on + strandat 1709.518 kb on - strandat 1709.523 kb on + strandat 1709.656 kb on - strandat 1709.727 kb on + strand, within AMB_RS07960at 1709.728 kb on - strand, within AMB_RS07960at 1709.985 kb on + strand, within AMB_RS07960at 1709.985 kb on + strand, within AMB_RS07960at 1710.194 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.254 kb on + strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.255 kb on - strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.356 kb on + strand, within AMB_RS07965at 1710.357 kb on - strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.413 kb on + strand, within AMB_RS07965at 1710.414 kb on - strand, within AMB_RS07965at 1710.414 kb on - strand, within AMB_RS07965at 1710.719 kb on + strand, within AMB_RS07965at 1710.742 kb on - strand, within AMB_RS07965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
remove
1,708,693 + AMB_RS24275 0.64 -1.2
1,708,693 + AMB_RS24275 0.64 -1.8
1,708,694 - AMB_RS24275 0.64 -1.2
1,708,694 - AMB_RS24275 0.64 -0.1
1,709,047 + AMB_RS24275 0.82 -0.5
1,709,194 + AMB_RS24275 0.89 +0.5
1,709,195 - AMB_RS24275 0.89 -1.0
1,709,195 - AMB_RS24275 0.89 +1.4
1,709,195 - AMB_RS24275 0.89 -2.2
1,709,388 - +0.4
1,709,388 - +1.4
1,709,398 - -0.3
1,709,464 + -0.9
1,709,518 - -1.9
1,709,523 + -0.9
1,709,656 - -2.3
1,709,727 + AMB_RS07960 0.19 -1.4
1,709,728 - AMB_RS07960 0.19 +0.4
1,709,985 + AMB_RS07960 0.86 +2.3
1,709,985 + AMB_RS07960 0.86 -0.2
1,710,194 + AMB_RS07965 0.14 -1.9
1,710,254 + AMB_RS07965 0.21 +1.4
1,710,254 + AMB_RS07965 0.21 -2.0
1,710,254 + AMB_RS07965 0.21 -1.9
1,710,254 + AMB_RS07965 0.21 -1.4
1,710,254 + AMB_RS07965 0.21 -0.9
1,710,254 + AMB_RS07965 0.21 -2.6
1,710,255 - AMB_RS07965 0.21 +0.3
1,710,255 - AMB_RS07965 0.21 -2.5
1,710,255 - AMB_RS07965 0.21 -2.4
1,710,255 - AMB_RS07965 0.21 -2.4
1,710,255 - AMB_RS07965 0.21 -0.1
1,710,356 + AMB_RS07965 0.33 +0.0
1,710,356 + AMB_RS07965 0.33 +0.5
1,710,356 + AMB_RS07965 0.33 +0.0
1,710,356 + AMB_RS07965 0.33 -1.7
1,710,356 + AMB_RS07965 0.33 -1.4
1,710,357 - AMB_RS07965 0.33 -0.2
1,710,413 + AMB_RS07965 0.39 -1.6
1,710,413 + AMB_RS07965 0.39 -0.4
1,710,413 + AMB_RS07965 0.39 -0.2
1,710,413 + AMB_RS07965 0.39 -2.2
1,710,413 + AMB_RS07965 0.39 -1.4
1,710,413 + AMB_RS07965 0.39 -0.2
1,710,413 + AMB_RS07965 0.39 -0.0
1,710,414 - AMB_RS07965 0.39 -1.1
1,710,414 - AMB_RS07965 0.39 -1.3
1,710,719 + AMB_RS07965 0.74 -1.9
1,710,742 - AMB_RS07965 0.77 +0.1

Or see this region's nucleotide sequence