Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07910

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07905 and AMB_RS07910 overlap by 1 nucleotidesAMB_RS07910 and AMB_RS07915 are separated by 145 nucleotides AMB_RS07905: AMB_RS07905 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 1,695,856 to 1,697,214 _RS07905 AMB_RS07910: AMB_RS07910 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 1,697,214 to 1,698,596 _RS07910 AMB_RS07915: AMB_RS07915 - hypothetical protein, at 1,698,742 to 1,699,971 _RS07915 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.571 kb on + strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.572 kb on - strand, within AMB_RS07905at 1696.657 kb on + strand, within AMB_RS07905at 1696.658 kb on - strand, within AMB_RS07905at 1697.311 kb on + strandat 1697.320 kb on + strandat 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.437 kb on + strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.438 kb on - strand, within AMB_RS07910at 1697.608 kb on + strand, within AMB_RS07910at 1697.608 kb on + strand, within AMB_RS07910at 1697.644 kb on + strand, within AMB_RS07910at 1697.645 kb on - strand, within AMB_RS07910at 1697.645 kb on - strand, within AMB_RS07910at 1697.786 kb on - strand, within AMB_RS07910at 1697.999 kb on - strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.011 kb on + strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910at 1698.012 kb on - strand, within AMB_RS07910at 1698.274 kb on + strand, within AMB_RS07910at 1698.274 kb on + strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.275 kb on - strand, within AMB_RS07910at 1698.341 kb on - strand, within AMB_RS07910at 1698.368 kb on + strand, within AMB_RS07910at 1698.611 kb on - strandat 1698.611 kb on - strandat 1698.650 kb on - strandat 1698.653 kb on - strandat 1698.743 kb on + strandat 1698.744 kb on - strandat 1699.214 kb on + strand, within AMB_RS07915at 1699.214 kb on + strand, within AMB_RS07915at 1699.226 kb on + strand, within AMB_RS07915at 1699.227 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915at 1699.596 kb on - strand, within AMB_RS07915

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,696,571 + AMB_RS07905 0.53 -1.9
1,696,571 + AMB_RS07905 0.53 -0.0
1,696,571 + AMB_RS07905 0.53 -0.6
1,696,571 + AMB_RS07905 0.53 -0.6
1,696,572 - AMB_RS07905 0.53 -0.2
1,696,572 - AMB_RS07905 0.53 -2.0
1,696,572 - AMB_RS07905 0.53 +1.3
1,696,657 + AMB_RS07905 0.59 -1.4
1,696,658 - AMB_RS07905 0.59 -2.0
1,697,311 + +1.0
1,697,320 + -0.5
1,697,437 + AMB_RS07910 0.16 +0.2
1,697,437 + AMB_RS07910 0.16 -0.9
1,697,437 + AMB_RS07910 0.16 -0.0
1,697,437 + AMB_RS07910 0.16 +0.4
1,697,437 + AMB_RS07910 0.16 -0.6
1,697,437 + AMB_RS07910 0.16 -0.7
1,697,437 + AMB_RS07910 0.16 +0.9
1,697,438 - AMB_RS07910 0.16 -0.4
1,697,438 - AMB_RS07910 0.16 -0.2
1,697,438 - AMB_RS07910 0.16 -1.4
1,697,438 - AMB_RS07910 0.16 -1.6
1,697,438 - AMB_RS07910 0.16 +3.8
1,697,608 + AMB_RS07910 0.28 -0.2
1,697,608 + AMB_RS07910 0.28 -1.2
1,697,644 + AMB_RS07910 0.31 -1.4
1,697,645 - AMB_RS07910 0.31 -0.1
1,697,645 - AMB_RS07910 0.31 +0.0
1,697,786 - AMB_RS07910 0.41 +0.5
1,697,999 - AMB_RS07910 0.57 -0.9
1,698,011 + AMB_RS07910 0.58 -1.3
1,698,011 + AMB_RS07910 0.58 -1.5
1,698,011 + AMB_RS07910 0.58 +0.4
1,698,012 - AMB_RS07910 0.58 -1.2
1,698,012 - AMB_RS07910 0.58 -1.5
1,698,274 + AMB_RS07910 0.77 -0.2
1,698,274 + AMB_RS07910 0.77 -1.8
1,698,275 - AMB_RS07910 0.77 -0.2
1,698,275 - AMB_RS07910 0.77 -0.9
1,698,275 - AMB_RS07910 0.77 +0.7
1,698,275 - AMB_RS07910 0.77 -1.9
1,698,341 - AMB_RS07910 0.81 -0.2
1,698,368 + AMB_RS07910 0.83 -1.6
1,698,611 - +0.3
1,698,611 - +0.6
1,698,650 - -1.6
1,698,653 - -0.2
1,698,743 + -0.7
1,698,744 - -2.2
1,699,214 + AMB_RS07915 0.38 +0.4
1,699,214 + AMB_RS07915 0.38 -1.4
1,699,226 + AMB_RS07915 0.39 +1.4
1,699,227 - AMB_RS07915 0.39 -1.2
1,699,596 - AMB_RS07915 0.69 -1.2
1,699,596 - AMB_RS07915 0.69 -1.8

Or see this region's nucleotide sequence