Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07820 and AMB_RS07825 are separated by 168 nucleotides AMB_RS07825 and AMB_RS07830 are separated by 125 nucleotides
AMB_RS07820: AMB_RS07820 - UDP pyrophosphate phosphatase, at 1,678,064 to 1,678,849
_RS07820
AMB_RS07825: AMB_RS07825 - hemerythrin, at 1,679,018 to 1,679,422
_RS07825
AMB_RS07830: AMB_RS07830 - NADP-dependent oxidoreductase, at 1,679,548 to 1,680,597
_RS07830
Position (kb) 1679
1680 Strain fitness (log2 ratio) -2
-1
0
1 at 1678.925 kb on - strand at 1678.970 kb on + strand at 1678.971 kb on - strand at 1678.971 kb on - strand at 1679.111 kb on + strand, within AMB_RS07825 at 1679.111 kb on + strand, within AMB_RS07825 at 1679.112 kb on - strand, within AMB_RS07825 at 1679.177 kb on + strand, within AMB_RS07825 at 1679.224 kb on + strand, within AMB_RS07825 at 1679.225 kb on - strand, within AMB_RS07825 at 1679.225 kb on - strand, within AMB_RS07825 at 1679.225 kb on - strand, within AMB_RS07825 at 1679.228 kb on + strand, within AMB_RS07825 at 1679.406 kb on - strand at 1679.406 kb on - strand at 1679.480 kb on + strand at 1679.720 kb on + strand, within AMB_RS07830 at 1679.720 kb on + strand, within AMB_RS07830 at 1679.721 kb on - strand, within AMB_RS07830 at 1679.721 kb on - strand, within AMB_RS07830 at 1679.721 kb on - strand, within AMB_RS07830 at 1679.721 kb on - strand, within AMB_RS07830 at 1679.810 kb on + strand, within AMB_RS07830 at 1679.811 kb on - strand, within AMB_RS07830 at 1679.945 kb on + strand, within AMB_RS07830 at 1679.945 kb on + strand, within AMB_RS07830 at 1679.945 kb on + strand, within AMB_RS07830 at 1679.945 kb on + strand, within AMB_RS07830 at 1679.945 kb on + strand, within AMB_RS07830 at 1679.946 kb on - strand, within AMB_RS07830 at 1679.946 kb on - strand, within AMB_RS07830 at 1679.946 kb on - strand, within AMB_RS07830 at 1679.946 kb on - strand, within AMB_RS07830 at 1679.946 kb on - strand, within AMB_RS07830 at 1680.022 kb on + strand, within AMB_RS07830 at 1680.171 kb on - strand, within AMB_RS07830 at 1680.171 kb on - strand, within AMB_RS07830 at 1680.188 kb on + strand, within AMB_RS07830 at 1680.188 kb on + strand, within AMB_RS07830 at 1680.197 kb on + strand, within AMB_RS07830 at 1680.197 kb on + strand, within AMB_RS07830 at 1680.197 kb on + strand, within AMB_RS07830 at 1680.230 kb on + strand, within AMB_RS07830 at 1680.230 kb on + strand, within AMB_RS07830 at 1680.230 kb on + strand, within AMB_RS07830 at 1680.231 kb on - strand, within AMB_RS07830 at 1680.409 kb on + strand, within AMB_RS07830 at 1680.410 kb on - strand, within AMB_RS07830
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 1,678,925 - -1.1 1,678,970 + +0.6 1,678,971 - -0.6 1,678,971 - -0.1 1,679,111 + AMB_RS07825 0.23 +0.4 1,679,111 + AMB_RS07825 0.23 +0.5 1,679,112 - AMB_RS07825 0.23 -0.5 1,679,177 + AMB_RS07825 0.39 -1.0 1,679,224 + AMB_RS07825 0.51 -0.2 1,679,225 - AMB_RS07825 0.51 -0.0 1,679,225 - AMB_RS07825 0.51 +0.4 1,679,225 - AMB_RS07825 0.51 -2.5 1,679,228 + AMB_RS07825 0.52 -2.1 1,679,406 - -0.9 1,679,406 - -0.8 1,679,480 + -1.1 1,679,720 + AMB_RS07830 0.16 -1.4 1,679,720 + AMB_RS07830 0.16 -1.6 1,679,721 - AMB_RS07830 0.16 -2.1 1,679,721 - AMB_RS07830 0.16 -0.9 1,679,721 - AMB_RS07830 0.16 -0.1 1,679,721 - AMB_RS07830 0.16 -0.4 1,679,810 + AMB_RS07830 0.25 -0.1 1,679,811 - AMB_RS07830 0.25 -0.6 1,679,945 + AMB_RS07830 0.38 -0.6 1,679,945 + AMB_RS07830 0.38 -0.3 1,679,945 + AMB_RS07830 0.38 -1.1 1,679,945 + AMB_RS07830 0.38 -1.9 1,679,945 + AMB_RS07830 0.38 -2.4 1,679,946 - AMB_RS07830 0.38 +0.1 1,679,946 - AMB_RS07830 0.38 +1.1 1,679,946 - AMB_RS07830 0.38 -0.6 1,679,946 - AMB_RS07830 0.38 -0.6 1,679,946 - AMB_RS07830 0.38 +1.4 1,680,022 + AMB_RS07830 0.45 -1.7 1,680,171 - AMB_RS07830 0.59 -1.6 1,680,171 - AMB_RS07830 0.59 -0.1 1,680,188 + AMB_RS07830 0.61 -2.4 1,680,188 + AMB_RS07830 0.61 -1.4 1,680,197 + AMB_RS07830 0.62 -0.7 1,680,197 + AMB_RS07830 0.62 -0.5 1,680,197 + AMB_RS07830 0.62 -2.4 1,680,230 + AMB_RS07830 0.65 -0.7 1,680,230 + AMB_RS07830 0.65 -0.1 1,680,230 + AMB_RS07830 0.65 -1.7 1,680,231 - AMB_RS07830 0.65 -2.1 1,680,409 + AMB_RS07830 0.82 +0.4 1,680,410 - AMB_RS07830 0.82 +0.4
Or see this region's nucleotide sequence