Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06930

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06920 and AMB_RS06925 are separated by 210 nucleotidesAMB_RS06925 and AMB_RS06930 overlap by 54 nucleotidesAMB_RS06930 and AMB_RS06935 are separated by 237 nucleotidesAMB_RS06935 and AMB_RS06940 overlap by 1 nucleotides AMB_RS06920: AMB_RS06920 - squalene--hopene cyclase, at 1,482,658 to 1,484,612 _RS06920 AMB_RS06925: AMB_RS06925 - nucleoside phosphorylase, at 1,484,823 to 1,485,473 _RS06925 AMB_RS06930: AMB_RS06930 - hopanoid biosynthesis associated radical SAM protein HpnH, at 1,485,420 to 1,486,571 _RS06930 AMB_RS06935: AMB_RS06935 - phosphate regulon transcriptional regulatory protein PhoB, at 1,486,809 to 1,487,531 _RS06935 AMB_RS06940: AMB_RS06940 - phosphate transport system regulatory protein PhoU, at 1,487,531 to 1,488,226 _RS06940 Position (kb) 1485 1486 1487Strain fitness (log2 ratio) -3 -2 -1 0 1at 1484.807 kb on + strandat 1485.506 kb on - strandat 1486.675 kb on + strandat 1486.693 kb on + strandat 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.939 kb on + strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1486.940 kb on - strand, within AMB_RS06935at 1487.201 kb on - strand, within AMB_RS06935at 1487.446 kb on + strand, within AMB_RS06935at 1487.447 kb on - strand, within AMB_RS06935at 1487.447 kb on - strand, within AMB_RS06935at 1487.532 kb on + strandat 1487.533 kb on - strandat 1487.533 kb on - strandat 1487.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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1,484,807 + -1.2
1,485,506 - -2.0
1,486,675 + +0.4
1,486,693 + +1.7
1,486,939 + AMB_RS06935 0.18 -1.6
1,486,939 + AMB_RS06935 0.18 -0.9
1,486,939 + AMB_RS06935 0.18 -0.3
1,486,939 + AMB_RS06935 0.18 -0.0
1,486,939 + AMB_RS06935 0.18 -0.5
1,486,939 + AMB_RS06935 0.18 -0.2
1,486,939 + AMB_RS06935 0.18 +0.0
1,486,940 - AMB_RS06935 0.18 -0.3
1,486,940 - AMB_RS06935 0.18 +1.4
1,486,940 - AMB_RS06935 0.18 +1.2
1,486,940 - AMB_RS06935 0.18 -0.2
1,487,201 - AMB_RS06935 0.54 -3.2
1,487,446 + AMB_RS06935 0.88 -1.7
1,487,447 - AMB_RS06935 0.88 -0.2
1,487,447 - AMB_RS06935 0.88 -0.8
1,487,532 + -1.6
1,487,533 - -0.3
1,487,533 - -1.4
1,487,533 - +0.2

Or see this region's nucleotide sequence