Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06680 and AMB_RS06685 are separated by 84 nucleotides AMB_RS06685 and AMB_RS06690 are separated by 100 nucleotides AMB_RS06690 and AMB_RS23265 are separated by 122 nucleotides
AMB_RS06680: AMB_RS06680 - orotate phosphoribosyltransferase, at 1,430,886 to 1,431,578
_RS06680
AMB_RS06685: AMB_RS06685 - enoyl-CoA hydratase, at 1,431,663 to 1,432,442
_RS06685
AMB_RS06690: AMB_RS06690 - hypothetical protein, at 1,432,543 to 1,433,520
_RS06690
AMB_RS23265: AMB_RS23265 - HAMP domain-containing protein, at 1,433,643 to 1,436,708
_RS23265
Position (kb) 1432
1433
1434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1431.615 kb on - strand at 1431.617 kb on - strand at 1431.909 kb on + strand, within AMB_RS06685 at 1431.909 kb on + strand, within AMB_RS06685 at 1431.910 kb on - strand, within AMB_RS06685 at 1432.383 kb on + strand at 1432.440 kb on + strand at 1432.440 kb on + strand at 1432.441 kb on - strand at 1432.476 kb on - strand at 1432.480 kb on + strand at 1432.480 kb on + strand at 1432.480 kb on + strand at 1432.703 kb on + strand, within AMB_RS06690 at 1432.704 kb on - strand, within AMB_RS06690 at 1432.704 kb on - strand, within AMB_RS06690 at 1433.042 kb on + strand, within AMB_RS06690 at 1433.043 kb on - strand, within AMB_RS06690 at 1433.081 kb on + strand, within AMB_RS06690 at 1433.082 kb on - strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.099 kb on + strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.100 kb on - strand, within AMB_RS06690 at 1433.304 kb on + strand, within AMB_RS06690 at 1433.351 kb on + strand, within AMB_RS06690 at 1433.351 kb on + strand, within AMB_RS06690 at 1433.630 kb on + strand at 1433.630 kb on + strand at 1433.630 kb on + strand at 1433.631 kb on - strand at 1433.719 kb on + strand at 1433.719 kb on + strand at 1433.796 kb on - strand at 1433.891 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 1,431,615 - +2.8 1,431,617 - -2.2 1,431,909 + AMB_RS06685 0.32 -1.6 1,431,909 + AMB_RS06685 0.32 -1.4 1,431,910 - AMB_RS06685 0.32 -0.9 1,432,383 + -0.9 1,432,440 + -0.9 1,432,440 + -1.7 1,432,441 - -0.5 1,432,476 - +0.7 1,432,480 + +0.7 1,432,480 + +0.9 1,432,480 + -2.0 1,432,703 + AMB_RS06690 0.16 -2.7 1,432,704 - AMB_RS06690 0.16 -1.3 1,432,704 - AMB_RS06690 0.16 -2.6 1,433,042 + AMB_RS06690 0.51 -1.1 1,433,043 - AMB_RS06690 0.51 +0.8 1,433,081 + AMB_RS06690 0.55 -0.5 1,433,082 - AMB_RS06690 0.55 +1.0 1,433,099 + AMB_RS06690 0.57 -0.6 1,433,099 + AMB_RS06690 0.57 -1.1 1,433,099 + AMB_RS06690 0.57 -2.9 1,433,099 + AMB_RS06690 0.57 +1.1 1,433,099 + AMB_RS06690 0.57 +0.0 1,433,099 + AMB_RS06690 0.57 -1.1 1,433,099 + AMB_RS06690 0.57 -2.5 1,433,099 + AMB_RS06690 0.57 -0.9 1,433,099 + AMB_RS06690 0.57 -0.3 1,433,100 - AMB_RS06690 0.57 +0.4 1,433,100 - AMB_RS06690 0.57 -2.2 1,433,100 - AMB_RS06690 0.57 +1.0 1,433,100 - AMB_RS06690 0.57 +0.6 1,433,100 - AMB_RS06690 0.57 -1.0 1,433,100 - AMB_RS06690 0.57 -2.1 1,433,100 - AMB_RS06690 0.57 -2.0 1,433,100 - AMB_RS06690 0.57 -1.6 1,433,100 - AMB_RS06690 0.57 -1.1 1,433,100 - AMB_RS06690 0.57 +0.0 1,433,100 - AMB_RS06690 0.57 -1.4 1,433,100 - AMB_RS06690 0.57 -0.4 1,433,304 + AMB_RS06690 0.78 +0.1 1,433,351 + AMB_RS06690 0.83 +0.3 1,433,351 + AMB_RS06690 0.83 -0.1 1,433,630 + -1.2 1,433,630 + -0.8 1,433,630 + +0.4 1,433,631 - -1.0 1,433,719 + -0.9 1,433,719 + -0.3 1,433,796 - -1.1 1,433,891 - +1.4
Or see this region's nucleotide sequence