Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS05920 and AMB_RS05925 are separated by 123 nucleotides AMB_RS05925 and AMB_RS05930 are separated by 104 nucleotides AMB_RS05930 and AMB_RS05935 overlap by 53 nucleotides
AMB_RS05920: AMB_RS05920 - DUF3489 domain-containing protein, at 1,244,736 to 1,245,323
_RS05920
AMB_RS05925: AMB_RS05925 - hypothetical protein, at 1,245,447 to 1,245,665
_RS05925
AMB_RS05930: AMB_RS05930 - hypothetical protein, at 1,245,770 to 1,246,315
_RS05930
AMB_RS05935: AMB_RS05935 - phage terminase large subunit family protein, at 1,246,263 to 1,248,251
_RS05935
Position (kb) 1245
1246
1247 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1245.719 kb on - strand at 1245.982 kb on + strand, within AMB_RS05930 at 1245.982 kb on + strand, within AMB_RS05930 at 1245.982 kb on + strand, within AMB_RS05930 at 1245.982 kb on + strand, within AMB_RS05930 at 1245.982 kb on + strand, within AMB_RS05930 at 1245.982 kb on + strand, within AMB_RS05930 at 1245.983 kb on - strand, within AMB_RS05930 at 1246.423 kb on + strand at 1246.423 kb on + strand at 1246.476 kb on + strand, within AMB_RS05935 at 1246.476 kb on + strand, within AMB_RS05935 at 1246.476 kb on + strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.477 kb on - strand, within AMB_RS05935 at 1246.478 kb on + strand, within AMB_RS05935 at 1246.479 kb on - strand, within AMB_RS05935 at 1246.479 kb on - strand, within AMB_RS05935 at 1246.479 kb on - strand, within AMB_RS05935 at 1246.479 kb on - strand, within AMB_RS05935 at 1246.830 kb on + strand, within AMB_RS05935 at 1246.831 kb on - strand, within AMB_RS05935 at 1246.992 kb on + strand, within AMB_RS05935 at 1246.992 kb on + strand, within AMB_RS05935 at 1246.992 kb on + strand, within AMB_RS05935 at 1246.993 kb on - strand, within AMB_RS05935 at 1246.993 kb on - strand, within AMB_RS05935 at 1247.106 kb on + strand, within AMB_RS05935 at 1247.106 kb on + strand, within AMB_RS05935 at 1247.107 kb on - strand, within AMB_RS05935 at 1247.107 kb on - strand, within AMB_RS05935 at 1247.236 kb on - strand, within AMB_RS05935
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 1,245,719 - -0.6 1,245,982 + AMB_RS05930 0.39 -1.3 1,245,982 + AMB_RS05930 0.39 -0.9 1,245,982 + AMB_RS05930 0.39 -0.6 1,245,982 + AMB_RS05930 0.39 -1.4 1,245,982 + AMB_RS05930 0.39 -1.7 1,245,982 + AMB_RS05930 0.39 -3.0 1,245,983 - AMB_RS05930 0.39 +0.4 1,246,423 + -1.6 1,246,423 + -1.9 1,246,476 + AMB_RS05935 0.11 -0.9 1,246,476 + AMB_RS05935 0.11 -0.3 1,246,476 + AMB_RS05935 0.11 -0.9 1,246,477 - AMB_RS05935 0.11 +0.8 1,246,477 - AMB_RS05935 0.11 -1.1 1,246,477 - AMB_RS05935 0.11 +0.1 1,246,477 - AMB_RS05935 0.11 +0.3 1,246,477 - AMB_RS05935 0.11 -0.1 1,246,477 - AMB_RS05935 0.11 -1.4 1,246,478 + AMB_RS05935 0.11 -2.3 1,246,479 - AMB_RS05935 0.11 +0.5 1,246,479 - AMB_RS05935 0.11 -2.6 1,246,479 - AMB_RS05935 0.11 -0.9 1,246,479 - AMB_RS05935 0.11 +0.1 1,246,830 + AMB_RS05935 0.29 -0.4 1,246,831 - AMB_RS05935 0.29 +0.3 1,246,992 + AMB_RS05935 0.37 -0.9 1,246,992 + AMB_RS05935 0.37 -0.6 1,246,992 + AMB_RS05935 0.37 -0.7 1,246,993 - AMB_RS05935 0.37 +1.4 1,246,993 - AMB_RS05935 0.37 -0.9 1,247,106 + AMB_RS05935 0.42 -0.0 1,247,106 + AMB_RS05935 0.42 -1.9 1,247,107 - AMB_RS05935 0.42 -1.1 1,247,107 - AMB_RS05935 0.42 +0.0 1,247,236 - AMB_RS05935 0.49 -1.1
Or see this region's nucleotide sequence