Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04565 and AMB_RS04570 overlap by 4 nucleotides AMB_RS04570 and AMB_RS04575 are separated by 105 nucleotides AMB_RS04575 and AMB_RS04580 are separated by 473 nucleotides
AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855
_RS04565
AMB_RS04570: AMB_RS04570 - DNA-binding response regulator, at 957,852 to 958,454
_RS04570
AMB_RS04575: AMB_RS04575 - DNA-binding response regulator, at 958,560 to 959,210
_RS04575
AMB_RS04580: AMB_RS04580 - DUF192 domain-containing protein, at 959,684 to 960,178
_RS04580
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 957.750 kb on + strand at 957.750 kb on + strand at 957.750 kb on + strand at 957.751 kb on - strand at 957.762 kb on + strand at 957.763 kb on - strand at 957.865 kb on + strand at 957.865 kb on + strand at 957.865 kb on + strand at 957.866 kb on - strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.871 kb on - strand at 957.871 kb on - strand at 957.871 kb on - strand at 957.871 kb on - strand at 958.470 kb on + strand at 958.471 kb on - strand at 958.541 kb on + strand at 958.581 kb on + strand at 958.581 kb on + strand at 958.582 kb on - strand at 959.004 kb on + strand, within AMB_RS04575 at 959.042 kb on + strand, within AMB_RS04575 at 959.224 kb on + strand at 959.225 kb on - strand at 959.362 kb on - strand at 959.412 kb on + strand at 959.543 kb on + strand at 959.574 kb on + strand at 959.646 kb on - strand at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 959.990 kb on - strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.035 kb on + strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580 at 960.036 kb on - strand, within AMB_RS04580
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 957,750 + -0.5 957,750 + -1.1 957,750 + -1.6 957,751 - +0.5 957,762 + -1.6 957,763 - -0.8 957,865 + -1.5 957,865 + -2.3 957,865 + -1.7 957,866 - -0.1 957,870 + -2.9 957,870 + +0.2 957,870 + -1.5 957,870 + -0.5 957,870 + -1.9 957,871 - -0.7 957,871 - -0.4 957,871 - -1.1 957,871 - -0.5 958,470 + -0.3 958,471 - -0.5 958,541 + +1.5 958,581 + -2.0 958,581 + -0.9 958,582 - -2.3 959,004 + AMB_RS04575 0.68 -0.7 959,042 + AMB_RS04575 0.74 -0.3 959,224 + -1.8 959,225 - -0.6 959,362 - -0.0 959,412 + -1.3 959,543 + -0.5 959,574 + -0.1 959,646 - -0.5 959,990 - AMB_RS04580 0.62 +0.9 959,990 - AMB_RS04580 0.62 +1.0 959,990 - AMB_RS04580 0.62 +0.3 959,990 - AMB_RS04580 0.62 -0.8 960,035 + AMB_RS04580 0.71 +0.4 960,035 + AMB_RS04580 0.71 -0.5 960,035 + AMB_RS04580 0.71 +0.6 960,035 + AMB_RS04580 0.71 -0.1 960,035 + AMB_RS04580 0.71 -1.3 960,035 + AMB_RS04580 0.71 -1.3 960,035 + AMB_RS04580 0.71 +1.0 960,035 + AMB_RS04580 0.71 -1.6 960,035 + AMB_RS04580 0.71 -0.5 960,035 + AMB_RS04580 0.71 +0.4 960,036 - AMB_RS04580 0.71 +0.2 960,036 - AMB_RS04580 0.71 +0.7 960,036 - AMB_RS04580 0.71 +1.0 960,036 - AMB_RS04580 0.71 +0.5 960,036 - AMB_RS04580 0.71 +0.5 960,036 - AMB_RS04580 0.71 +1.5
Or see this region's nucleotide sequence